CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

sox4a *(Gasterosteus aculeatus)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	ENSGACG00000006620	T328094_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SOX4 M01026_2.00	Homo sapiens	AACAAWGR	YCWTTGTT	PBM Scharer et al.(2009) Sox4	0.735	0.986
SOX4 M03496_2.00	Homo sapiens	NAACAATTKCAGTGTT	AACACTGMAATTGTTN	SELEX Jolma et al.(2013) SOX4_1	0.735	0.986
SOX4 M05765_2.00	Homo sapiens	NRACAAWGVV	BBCWTTGTYN	SELEX Yin et al.(2017) SOX4_eDBD_HT-SELEX	0.735	0.986
SOX4 M09388_2.00	Homo sapiens	BYCTTTGTYYBB	VVRRACAAAGRV	Misc Kulakovskiy et al.(2013) SOX4_HUMAN.H11MO.0.B	0.735	0.986
SOX4 M11301_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q3	0.735	0.986
SOX4 M11302_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q5_02	0.735	0.986
SOX4 M11303_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX4_Q5	0.735	0.986
SOX4 M05766_2.00	Homo sapiens	NRACAAWGVV	BBCWTTGTYN	SELEX Yin et al.(2017) SOX4_eDBD_Methyl-HT-SELEX	0.735	0.986
Sox4 M00213_2.00	Mus musculus	NNVACAAWD	HWTTGTBNN	PBM Badis et al.(2009) Sox4_2941	0.735	0.971
Sox4 M09410_2.00	Mus musculus	BYCTTTGTYYBB	VVRRACAAAGRV	Misc Kulakovskiy et al.(2013) SOX4_MOUSE.H11MO.0.A	0.735	0.971
Sox4 M09641_2.00	Mus musculus	BCWTTGTYCN	NGRACAAWGV	Misc Heinz et al.(2010) proB-Sox4_GSE50066	0.735	0.971
Sox11 M00210_2.00	Mus musculus	WTTGTBNNN	NNNVACAAW	PBM Badis et al.(2009) Sox11_2266	0.735	0.942
Sox11 M03541_2.00	Mus musculus	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) Sox11_1	0.735	0.942
SOX11 M11326_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX11_Q6	0.735	0.942
Sox12 M00205_2.00	Mus musculus	HWTTGTBNNN	NNNVACAAWD	PBM Badis et al.(2009) Sox12_3957	0.671	0.884
SOX12 M05789_2.00	Homo sapiens	NATTGTTCGGK	MCCGAACAATN	SELEX Yin et al.(2017) SOX12_eDBD_HT-SELEX	0.671	0.884
SOX12 M05790_2.00	Homo sapiens	YATTGTTCBKT	AMVGAACAATR	SELEX Yin et al.(2017) SOX12_eDBD_Methyl-HT-SELEX	0.671	0.884
sem-2 M02488_2.00	Caenorhabditis elegans	NNNHVNNNNN	NNNNNBDNNN	PBM Weirauch et al.(2014) pTH9043	0.603	0.739
Sox14 M03971_2.00	Drosophila melanogaster	BTGTWCGGTR	YACCGWACAV	SELEX Nitta et al.(2015) Sox14_1	0.603	0.710
Sox14 M03972_2.00	Drosophila melanogaster	VACAATDNCATTGTB	VACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox14_2	0.603	0.710
Sox14 M06449_2.00	Drosophila melanogaster	VYYCTTTGTYC	GRACAAAGRRB	B1H Zhu et al.(2011) Sox14_SANGER_10_FBgn0005612	0.603	0.710
Sox5 M00203_2.00	Mus musculus	ATTGTBNN	NNVACAAT	PBM Badis et al.(2009) Sox5_3459	0.589	0.580
Sox13 M00212_2.00	Mus musculus	RAACAATW	WATTGTTY	PBM Badis et al.(2009) Sox13_1718	0.589	0.580
SOX5 M05894_2.00	Homo sapiens	DVACAATRVN	NBYATTGTBH	SMiLE-seq Isakova et al.(2017) SOX5	0.589	0.580
Sox5 M02719_2.00	Mus musculus	NAACAAT	ATTGTTN	SELEX Mathelier et al.(2014) MA0087.1	0.589	0.580
SOX13 M08166_2.00	Homo sapiens	NNACAATGVNN	NNBCATTGTNN	ChIP-seq Mathelier et al.(2014) MA1120.1	0.589	0.580
SOX5 M09390_2.00	Homo sapiens	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_HUMAN.H11MO.0.C	0.589	0.580
Sox5 M09404_2.00	Mus musculus	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_MOUSE.H11MO.0.C	0.589	0.580
SOX5 M11309_2.00	Homo sapiens	NNAACAATNN	NNATTGTTNN	Transfac Matys et al.(2006) V$SOX5_01	0.589	0.580
SOX5 M11310_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX5_Q5	0.589	0.580
Sox6 M00828_2.00	Mus musculus	WTTGTNNNN	NNNNACAAW	PBM Weirauch et al.(2013) pTH3862	0.589	0.565
SOX6 M05892_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX6	0.589	0.565
Sox6 M08169_2.00	Mus musculus	BCWTTGTYYY	RRRACAAWGV	ChIP-seq Mathelier et al.(2014) MA0515.1	0.589	0.565
Sox6 M09640_2.00	Mus musculus	BHWTTGTBNN	NNVACAAWDV	Misc Heinz et al.(2010) Myotubes-Sox6_GSE32627	0.589	0.565
SOX6 M11300_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX6_Q5	0.589	0.565
Sox15 M00202_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox15_3457	0.584	0.652
SOX15 M03508_2.00	Homo sapiens	AACAATAMCATTGTT	AACAATGKTATTGTT	SELEX Jolma et al.(2013) SOX15_1	0.584	0.638
SOX15 M03509_2.00	Homo sapiens	ATCAATAMCATTGAT	ATCAATGKTATTGAT	SELEX Jolma et al.(2013) SOX15_2	0.584	0.638
SOX15 M03510_2.00	Homo sapiens	ATGAATAACATTCAT	ATGAATGTTATTCAT	SELEX Jolma et al.(2013) SOX15_3	0.584	0.638
SOX15 M05893_2.00	Homo sapiens	YYWTTGTNHN	NDNACAAWRR	SMiLE-seq Isakova et al.(2017) SOX15	0.584	0.638
SOX15 M11308_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX15_Q3	0.584	0.638
D M03969_2.00	Drosophila melanogaster	AMVGAACAAT	ATTGTTCBKT	SELEX Nitta et al.(2015) D_1	0.579	0.667
D M03970_2.00	Drosophila melanogaster	NAACAATDNCATTGTTN	NAACAATGNHATTGTTN	SELEX Nitta et al.(2015) D_2	0.579	0.667
Sox21b M03983_2.00	Drosophila melanogaster	NAACAMTWNCAKTGTTB	VAACAMTGNWAKTGTTN	SELEX Nitta et al.(2015) Sox21b_1	0.579	0.667
D M06559_2.00	Drosophila melanogaster	BCYWTTGTTNT	ANAACAAWRGV	B1H Mathelier et al.(2014) MA0445.1	0.579	0.667
D M06448_2.00	Drosophila melanogaster	BCYATTGTYNW	WNRACAATRGV	B1H Zhu et al.(2011) D_NAR_FBgn0000411	0.579	0.667
D M09694_2.00	Drosophila melanogaster	RACAAWRGVH	DBCYWTTGTY	Misc Kulakovskiy et al.(2009) D	0.579	0.667
Sox3 M00827_2.00	Mus musculus	WDTVHNNN	NNNDBAHW	PBM Weirauch et al.(2013) pTH3087	0.578	0.667
Sox3 M03538_2.00	Mus musculus	RAACAATRNYATTGTTK	MAACAATRNYATTGTTY	SELEX Jolma et al.(2013) Sox3_1	0.578	0.667
Sox3 M03539_2.00	Mus musculus	BATCAATGBYATTGATD	HATCAATRVCATTGATV	SELEX Jolma et al.(2013) Sox3_2	0.578	0.667
Sox3 M03540_2.00	Mus musculus	DATGAATKNYATTCATR	YATGAATRNMATTCATH	SELEX Jolma et al.(2013) Sox3_3	0.578	0.667
SOX3 M05769_2.00	Homo sapiens	VYATTKTNVS	SBNAMAATRB	SELEX Yin et al.(2017) SOX3_FL_HT-SELEX	0.578	0.667
Sox3 M08168_2.00	Mus musculus	CCTTTGTYYB	VRRACAAAGG	ChIP-seq Mathelier et al.(2014) MA0514.1	0.578	0.667
SOX3 M09391_2.00	Homo sapiens	BYCWTTGTBYB	VRVACAAWGRV	Misc Kulakovskiy et al.(2013) SOX3_HUMAN.H11MO.0.B	0.578	0.667
Sox3 M09405_2.00	Mus musculus	VRVACAAWGGV	BCCWTTGTBYB	Misc Kulakovskiy et al.(2013) SOX3_MOUSE.H11MO.0.C	0.578	0.667
Sox3 M09639_2.00	Mus musculus	VACAAWRG	CYWTTGTB	Misc Heinz et al.(2010) NPC-Sox3_GSE33059	0.578	0.667
SOX3 M05770_2.00	Homo sapiens	BYATTGTBNN	NNVACAATRV	SELEX Yin et al.(2017) SOX3_FL_Methyl-HT-SELEX	0.578	0.667
Sox7 M00209_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox7_3460	0.577	0.638
SOX7 M03516_2.00	Homo sapiens	AACAATRDNHAKTGTT	AACAMTDNHYATTGTT	SELEX Jolma et al.(2013) SOX7_1	0.577	0.638
SOX7 M03517_2.00	Homo sapiens	DAACAATKDYAKTGTTN	NAACAMTRHMATTGTTH	SELEX Jolma et al.(2013) SOX7_2	0.577	0.638
SOX7 M03518_2.00	Homo sapiens	NATGAATKDCAKTCATN	NATGAMTGHMATTCATN	SELEX Jolma et al.(2013) SOX7_3	0.577	0.638
SOX7 M05787_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_HT-SELEX	0.577	0.638
SOX7 M11325_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX7_Q2	0.577	0.638
SOX7 M05788_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_Methyl-HT-SELEX	0.577	0.638
Sox10 M00826_2.00	Mus musculus	NNNNWBAAT	ATTVWNNNN	PBM Weirauch et al.(2013) pTH1729	0.571	0.667
SOX10 M03491_2.00	Homo sapiens	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) SOX10_1	0.571	0.667
SOX10 M03492_2.00	Homo sapiens	AACAATRTKCAGTGTT	AACACTGMAYATTGTT	SELEX Jolma et al.(2013) SOX10_2	0.571	0.667
SOX10 M03493_2.00	Homo sapiens	ATCAATTKCAGTGAT	ATCACTGMAATTGAT	SELEX Jolma et al.(2013) SOX10_3	0.571	0.667
SOX10 M03494_2.00	Homo sapiens	ATGAATTKCAGTCAT	ATGACTGMAATTCAT	SELEX Jolma et al.(2013) SOX10_4	0.571	0.667
SOX10 M03495_2.00	Homo sapiens	TGAATGTKCAGTCA	TGACTGMACATTCA	SELEX Jolma et al.(2013) SOX10_5	0.571	0.667
Sox10 M03535_2.00	Mus musculus	AACAATTKCAGTGTT	AACACTGMAATTGTT	SELEX Jolma et al.(2013) Sox10_1	0.571	0.667
Sox10 M03536_2.00	Mus musculus	ATCAATTKCAGTGAT	ATCACTGMAATTGAT	SELEX Jolma et al.(2013) Sox10_2	0.571	0.667
Sox10 M03537_2.00	Mus musculus	ATGAATTDCAGTCAT	ATGACTGHAATTCAT	SELEX Jolma et al.(2013) Sox10_3	0.571	0.667
SOX10 M05759_2.00	Homo sapiens	AACAATRNNNYATTGTT	AACAATRNNNYATTGTT	SELEX Yin et al.(2017) SOX10_eDBD_HT-SELEX	0.571	0.667
SOX10 M05761_2.00	Homo sapiens	NACAATRVNNBYATTGTN	NACAATRVNNBYATTGTN	SELEX Yin et al.(2017) SOX10_FL_HT-SELEX	0.571	0.667
SOX10 M05891_2.00	Homo sapiens	BBCWWTGTTH	DAACAWWGVV	SMiLE-seq Isakova et al.(2017) SOX10	0.571	0.667
SOX10 M08165_2.00	Homo sapiens	NNVACAAAGVN	NBCTTTGTBNN	ChIP-seq Mathelier et al.(2014) MA0442.2	0.571	0.667
SOX10 M09387_2.00	Homo sapiens	VAADRVVNBCWTTGTN	NACAAWGVNBBYHTTB	Misc Kulakovskiy et al.(2013) SOX10_HUMAN.H11MO.0.B	0.571	0.667
Sox10 M09403_2.00	Mus musculus	VAADRVVNBCWTTGTN	NACAAWGVNBBYHTTB	Misc Kulakovskiy et al.(2013) SOX10_MOUSE.H11MO.0.B	0.571	0.667
SOX10 M11296_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q3	0.571	0.667
SOX10 M11297_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q6_01	0.571	0.667
SOX10 M11298_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX10_Q6	0.571	0.667
SOX10 M05760_2.00	Homo sapiens	AACAATRSNSYATTGTT	AACAATRSNSYATTGTT	SELEX Yin et al.(2017) SOX10_eDBD_Methyl-HT-SELEX	0.571	0.667
SOX10 M05762_2.00	Homo sapiens	NACAATRVNNBYATTGTN	NACAATRVNNBYATTGTN	SELEX Yin et al.(2017) SOX10_FL_Methyl-HT-SELEX	0.571	0.667
Sox8 M00197_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox8_1733	0.571	0.638
SOX8 M03483_2.00	Homo sapiens	AACAATRTGCAGTGTT	AACACTGCAYATTGTT	SELEX Jolma et al.(2013) SOX8_1	0.571	0.638
SOX8 M03484_2.00	Homo sapiens	ATGAATTKCAGTC	GACTGMAATTCAT	SELEX Jolma et al.(2013) SOX8_2	0.571	0.638
SOX8 M03485_2.00	Homo sapiens	RAACAATTKCAGTGTTN	NAACACTGMAATTGTTY	SELEX Jolma et al.(2013) SOX8_3	0.571	0.638
SOX8 M03486_2.00	Homo sapiens	HATCAATTKCAGTGATN	NATCACTGMAATTGATD	SELEX Jolma et al.(2013) SOX8_4	0.571	0.638
SOX8 M03487_2.00	Homo sapiens	TGAATRTKCAGTCA	TGACTGMAYATTCA	SELEX Jolma et al.(2013) SOX8_5	0.571	0.638
SOX8 M03488_2.00	Homo sapiens	AACAATTDCAGTGTT	AACACTGHAATTGTT	SELEX Jolma et al.(2013) SOX8_6	0.571	0.638
SOX8 M03489_2.00	Homo sapiens	ATGAATTKCAGTC	GACTGMAATTCAT	SELEX Jolma et al.(2013) SOX8_7	0.571	0.638
SOX8 M03490_2.00	Homo sapiens	MATCAATTGCAGTGATK	MATCACTGCAATTGATK	SELEX Jolma et al.(2013) SOX8_8	0.571	0.638
SOX9 M03501_2.00	Homo sapiens	DDACAATRV	BYATTGTHH	SELEX Jolma et al.(2013) SOX9_1	0.571	0.638
SOX9 M03502_2.00	Homo sapiens	AACAATRTGCAGTGTT	AACACTGCAYATTGTT	SELEX Jolma et al.(2013) SOX9_2	0.571	0.638
SOX9 M03503_2.00	Homo sapiens	ATCAATRTKCAGTGAT	ATCACTGMAYATTGAT	SELEX Jolma et al.(2013) SOX9_3	0.571	0.638
SOX9 M03504_2.00	Homo sapiens	ATGAATRTKCAGTCAT	ATGACTGMAYATTCAT	SELEX Jolma et al.(2013) SOX9_4	0.571	0.638
SOX9 M03505_2.00	Homo sapiens	RAACAATTKCAGTGTTH	DAACACTGMAATTGTTY	SELEX Jolma et al.(2013) SOX9_5	0.571	0.638
SOX9 M03506_2.00	Homo sapiens	NATCAATKKYAGTGATN	NATCACTRMMATTGATN	SELEX Jolma et al.(2013) SOX9_6	0.571	0.638
SOX9 M03507_2.00	Homo sapiens	NATGAATTKCAGTCATN	NATGACTGMAATTCATN	SELEX Jolma et al.(2013) SOX9_7	0.571	0.638
SOX8 M05749_2.00	Homo sapiens	NDAACAATRV	BYATTGTTHN	SELEX Yin et al.(2017) SOX8_eDBD_HT-SELEX	0.571	0.638
SOX8 M05751_2.00	Homo sapiens	ACAATRVNNBYATTGT	ACAATRVNNBYATTGT	SELEX Yin et al.(2017) SOX8_FL_HT-SELEX	0.571	0.638
SOX9 M05767_2.00	Homo sapiens	HDAACAATRV	BYATTGTTHD	SELEX Yin et al.(2017) SOX9_eDBD_HT-SELEX	0.571	0.638
SOX9 M02716_2.00	Homo sapiens	DAACAATRG	CYATTGTTH	SELEX Mathelier et al.(2014) MA0077.1	0.571	0.638
SOX9 M09389_2.00	Homo sapiens	RMACAAWGVNNBYHTT	AADRVNNBCWTTGTKY	Misc Kulakovskiy et al.(2013) SOX9_HUMAN.H11MO.0.B	0.571	0.638
Sox9 M09399_2.00	Mus musculus	RMACAAWGVNNBYHTT	AADRVNNBCWTTGTKY	Misc Kulakovskiy et al.(2013) SOX9_MOUSE.H11MO.0.A	0.571	0.638
SOX9 M11304_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_09	0.571	0.638
SOX9 M11305_2.00	Homo sapiens	NNNDAACAATRRNN	NNYYATTGTTHNNN	Transfac Matys et al.(2006) V$SOX9_B1	0.571	0.638
SOX9 M11306_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_Q4	0.571	0.638
SOX9 M11307_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX9_Q5	0.571	0.638
SOX8 M05750_2.00	Homo sapiens	BYATTGTTNN	NNAACAATRV	SELEX Yin et al.(2017) SOX8_eDBD_Methyl-HT-SELEX	0.571	0.638
SOX8 M05752_2.00	Homo sapiens	ACAATRVNNBYATTGT	ACAATRVNNBYATTGT	SELEX Yin et al.(2017) SOX8_FL_Methyl-HT-SELEX	0.571	0.638
SOX9 M05768_2.00	Homo sapiens	NNNACAATRS	SYATTGTNNN	SELEX Yin et al.(2017) SOX9_eDBD_Methyl-HT-SELEX	0.571	0.638
Sox21a M03978_2.00	Drosophila melanogaster	NMACAMTAVCATTGTKN	NMACAATGBTAKTGTKN	SELEX Nitta et al.(2015) Sox21a_1	0.568	0.652
Sox21a M03979_2.00	Drosophila melanogaster	NNACAMTANCATTGTYH	DRACAATGNTAKTGTNN	SELEX Nitta et al.(2015) Sox21a_2	0.568	0.652
Sox14 M00829_2.00	Mus musculus	NAACAATD	HATTGTTN	PBM Weirauch et al.(2013) pTH2677	0.568	0.638
Sox14 M00206_2.00	Mus musculus	NNNABAAW	WTTVTNNN	PBM Badis et al.(2009) Sox14_2677	0.568	0.638
SOX14 M03513_2.00	Homo sapiens	ACAMTAMCATTG	CAATGKTAKTGT	SELEX Jolma et al.(2013) SOX14_1	0.568	0.638
SOX14 M03514_2.00	Homo sapiens	NTGAATANCATTCAN	NTGAATGNTATTCAN	SELEX Jolma et al.(2013) SOX14_2	0.568	0.638
SOX14 M03515_2.00	Homo sapiens	TCAATWVCATTGA	TCAATGBWATTGA	SELEX Jolma et al.(2013) SOX14_3	0.568	0.638
SOX14 M05783_2.00	Homo sapiens	NYATTGWNNN	NNNWCAATRN	SELEX Yin et al.(2017) SOX14_eDBD_HT-SELEX	0.568	0.638
SOX14 M05785_2.00	Homo sapiens	NCGAACAATK	MATTGTTCGN	SELEX Yin et al.(2017) SOX14_FL_HT-SELEX	0.568	0.638
SOX14 M05784_2.00	Homo sapiens	NYATTGTNNN	NNNACAATRN	SELEX Yin et al.(2017) SOX14_eDBD_Methyl-HT-SELEX	0.568	0.638
SOX14 M05786_2.00	Homo sapiens	NATTGTTYGB	VCRAACAATN	SELEX Yin et al.(2017) SOX14_FL_Methyl-HT-SELEX	0.568	0.638
Sox21 M00208_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox21_3417	0.568	0.652
SOX21 M03497_2.00	Homo sapiens	AACAATKKYAKTGTT	AACAMTRMMATTGTT	SELEX Jolma et al.(2013) SOX21_1	0.568	0.652
SOX21 M03498_2.00	Homo sapiens	AACAATRKDYAKTGTT	AACAMTRHMYATTGTT	SELEX Jolma et al.(2013) SOX21_2	0.568	0.652
SOX21 M03499_2.00	Homo sapiens	TCAATGDYAKTGA	TCAMTRHCATTGA	SELEX Jolma et al.(2013) SOX21_3	0.568	0.652
SOX21 M03500_2.00	Homo sapiens	TGAATGKYAKTCA	TGAMTRMCATTCA	SELEX Jolma et al.(2013) SOX21_4	0.568	0.652
SOX2 M03519_2.00	Homo sapiens	DAACAATGKYAKTGTTN	NAACAMTRMCATTGTTH	SELEX Jolma et al.(2013) SOX2_1	0.568	0.638
SOX2 M03520_2.00	Homo sapiens	VTGAATGDYATTCAN	NTGAATRHCATTCAB	SELEX Jolma et al.(2013) SOX2_2	0.568	0.638
SOX2 M03521_2.00	Homo sapiens	NATCAATGNYATTGAWD	HWTCAATRNCATTGATN	SELEX Jolma et al.(2013) SOX2_3	0.568	0.638
SOX2 M03522_2.00	Homo sapiens	NAACAATANCATTGTTH	DAACAATGNTATTGTTN	SELEX Jolma et al.(2013) SOX2_4	0.568	0.638
SOX2 M03523_2.00	Homo sapiens	HATCAATANCATTGATH	DATCAATGNTATTGATD	SELEX Jolma et al.(2013) SOX2_5	0.568	0.638
SOX2 M03524_2.00	Homo sapiens	DTGAATWNCATTCAH	DTGAATGNWATTCAH	SELEX Jolma et al.(2013) SOX2_6	0.568	0.638
SoxN M03976_2.00	Drosophila melanogaster	VYGHACARTNN	NNAYTGTDCRB	SELEX Nitta et al.(2015) SoxN_1	0.568	0.638
SoxN M03977_2.00	Drosophila melanogaster	NCAATNVCATTGN	NCAATGBNATTGN	SELEX Nitta et al.(2015) SoxN_2	0.568	0.638
SOX2 M05897_2.00	Homo sapiens	NACAAWRRNN	NNYYWTTGTN	SMiLE-seq Isakova et al.(2017) SOX2	0.568	0.638
Sox2 M08170_2.00	Mus musculus	CCWTTGTB	VACAAWGG	ChIP-seq Mathelier et al.(2014) MA0143.3	0.568	0.638
Sox2 M08041_2.00	Mus musculus	WHWRMADNACAAWRR	YYWTTGTNHTKYWDW	ChIP-seq Chen et al.(2011) SRP000217_Sox2	0.568	0.638
Sox2 M08042_2.00	Mus musculus	TTWRCATNWSAAWRV	BYWTTSWNATGYWAA	ChIP-seq Chen et al.(2011) SRP000712_Sox2	0.568	0.638
SOX2 M09397_2.00	Homo sapiens	BBYYWTTGTBYBB	VVRVACAAWRRVV	Misc Kulakovskiy et al.(2013) SOX2_HUMAN.H11MO.0.A	0.568	0.638
Sox2 M09409_2.00	Mus musculus	THWRCATNACAAWRRV	BYYWTTGTNATGYWDA	Misc Kulakovskiy et al.(2013) SOX2_MOUSE.H11MO.0.A	0.568	0.638
SOX2 M11327_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3_01	0.568	0.638
SOX2 M11328_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3	0.568	0.638
SOX2 M11329_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q4	0.568	0.638
SOX2 M11330_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q6	0.568	0.638
Sox1 M00214_2.00	Mus musculus	NNNNNWBAAW	WTTVWNNNNN	PBM Badis et al.(2009) Sox1_2631	0.568	0.609
Sox1 M03542_2.00	Mus musculus	VACAATWNCATTGTT	AACAATGNWATTGTB	SELEX Jolma et al.(2013) Sox1_1	0.568	0.609
Sox1 M03543_2.00	Mus musculus	NTGAATWNCATTCAN	NTGAATGNWATTCAN	SELEX Jolma et al.(2013) Sox1_2	0.568	0.609
Sox1 M03544_2.00	Mus musculus	TCAATWNCATTGA	TCAATGNWATTGA	SELEX Jolma et al.(2013) Sox1_3	0.568	0.609
Sox1 M03545_2.00	Mus musculus	TGAATDDNHATTCA	TGAATDNHHATTCA	SELEX Jolma et al.(2013) Sox1_4	0.568	0.609
Sox17 M00199_2.00	Mus musculus	NNNNWSAAT	ATTSWNNNN	PBM Badis et al.(2009) Sox17_2837	0.568	0.609
Sox17 M03533_2.00	Mus musculus	AACAATWDCATTGTT	AACAATGHWATTGTT	SELEX Jolma et al.(2013) Sox17_1	0.568	0.609
Sox17 M03534_2.00	Mus musculus	ATGAATWNCATTCAT	ATGAATGNWATTCAT	SELEX Jolma et al.(2013) Sox17_2	0.568	0.609
SOX17 M05896_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX17	0.568	0.609
Sox17 M02718_2.00	Mus musculus	SACAATRNN	NNYATTGTS	SELEX Mathelier et al.(2014) MA0078.1	0.568	0.609
Sox17 M08040_2.00	Mus musculus	RVACAAWRRVN	NBYYWTTGTBY	ChIP-seq Chen et al.(2011) GSE19026_Sox17_XENcells	0.568	0.609
SOX17 M09396_2.00	Homo sapiens	BCCATTKTNBN	NVNAMAATGGV	Misc Kulakovskiy et al.(2013) SOX17_HUMAN.H11MO.0.C	0.568	0.609
SOX17 M11323_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX17_01	0.568	0.609
SOX17 M11324_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX17_Q2	0.568	0.609
Sox18 M00204_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox18_3506	0.568	0.580
SOX18 M03529_2.00	Homo sapiens	AACAATDNCATTGTT	AACAATGNHATTGTT	SELEX Jolma et al.(2013) SOX18_1	0.568	0.580
SOX18 M03530_2.00	Homo sapiens	ATCAATWDCATTGAT	ATCAATGHWATTGAT	SELEX Jolma et al.(2013) SOX18_2	0.568	0.580
SOX18 M03531_2.00	Homo sapiens	ATGAATWYCATTCAT	ATGAATGRWATTCAT	SELEX Jolma et al.(2013) SOX18_3	0.568	0.580
SOX18 M05791_2.00	Homo sapiens	VACRAYGV	BCRTYGTB	SELEX Yin et al.(2017) SOX18_eDBD_HT-SELEX	0.568	0.580
SOX18 M11334_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX18_Q5_01	0.568	0.580
SOX18 M11335_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX18_Q5	0.568	0.580
SOX18 M05792_2.00	Homo sapiens	BYATTGTN	NACAATRV	SELEX Yin et al.(2017) SOX18_eDBD_Methyl-HT-SELEX	0.568	0.580
Sox15 M03973_2.00	Drosophila melanogaster	WYTGTTCGGTD	HACCGAACARW	SELEX Nitta et al.(2015) Sox15_1	0.549	0.565
Sox15 M03974_2.00	Drosophila melanogaster	VACAATDNCATTGTN	NACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox15_2	0.549	0.565
Sox15 M06450_2.00	Drosophila melanogaster	RWACAATR	YATTGTWY	B1H Zhu et al.(2011) Sox15_SANGER_5_FBgn0005613	0.549	0.565
egl-13 M00710_2.00	Caenorhabditis elegans	NNAACAATWN	NWATTGTTNN	PBM Narasimhan et al.(2015) pTH9125	0.546	0.580
Sox102F M03981_2.00	Drosophila melanogaster	ATTGTTCGGTGKN	NMCACCGAACAAT	SELEX Nitta et al.(2015) Sox102F_1	0.546	0.580
Sox102F M03982_2.00	Drosophila melanogaster	NAACAATDDCATTGTTN	NAACAATGHHATTGTTN	SELEX Nitta et al.(2015) Sox102F_2	0.546	0.580
SRY M03525_2.00	Homo sapiens	AACAATANCATTGTT	AACAATGNTATTGTT	SELEX Jolma et al.(2013) SRY_1	0.543	0.522
SRY M03526_2.00	Homo sapiens	AACAATHHNCATTGTT	AACAATGNDDATTGTT	SELEX Jolma et al.(2013) SRY_2	0.543	0.522
SRY M03527_2.00	Homo sapiens	TCAATAMCATTGA	TCAATGKTATTGA	SELEX Jolma et al.(2013) SRY_3	0.543	0.522
SRY M03528_2.00	Homo sapiens	TGAATANCATTCA	TGAATGNTATTCA	SELEX Jolma et al.(2013) SRY_4	0.543	0.522
SRY M05898_2.00	Homo sapiens	NACAATNV	BNATTGTN	SMiLE-seq Isakova et al.(2017) SRY	0.543	0.522
SRY M02717_2.00	Homo sapiens	NDWAACAAW	WTTGTWWHN	SELEX Mathelier et al.(2014) MA0084.1	0.543	0.522
SRY M09398_2.00	Homo sapiens	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_HUMAN.H11MO.0.B	0.543	0.522
SRY M11331_2.00	Homo sapiens	AAWSWMM	KKWSWTT	Transfac Matys et al.(2006) V$SRY_01	0.543	0.522
SRY M11332_2.00	Homo sapiens	HBHWTTGTTWDN	NHWAACAAWDVD	Transfac Matys et al.(2006) V$SRY_02	0.543	0.522
SRY M11333_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRY_Q6	0.543	0.522
Sry M00211_2.00	Mus musculus	ATTRTNNNNN	NNNNNAYAAT	PBM Badis et al.(2009) Sry_2833	0.542	0.580
Sry M09408_2.00	Mus musculus	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_MOUSE.H11MO.0.B	0.542	0.580
Sox30 M00201_2.00	Mus musculus	ATTRTBNNNN	NNNNVAYAAT	PBM Badis et al.(2009) Sox30_2781	0.527	0.420
SOX30 M05753_2.00	Homo sapiens	NRACAATN	NATTGTYN	SELEX Yin et al.(2017) SOX30_eDBD_HT-SELEX	0.527	0.420
SOX30 M05754_2.00	Homo sapiens	BATTGTYN	NRACAATV	SELEX Yin et al.(2017) SOX30_eDBD_Methyl-HT-SELEX	0.527	0.420
ROX1 M00070_2.00	Saccharomyces cerevisiae	NRAACAATWNN	NNWATTGTTYN	PBM Badis et al.(2008) ROX1_2099	0.491	0.391
ROX1 M07498_2.00	Saccharomyces cerevisiae	YYHATTGTTYTS	SARAACAATDRR	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0371.1	0.491	0.391
ROX1 M08607_2.00	Saccharomyces cerevisiae	BYATTGTN	NACAATRV	Misc DeBoer et al.(2011) YPR065W_1396	0.491	0.391
ROX1 M11346_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6_01	0.491	0.391
ROX1 M11347_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6	0.491	0.391
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSGACP00000008753	Sox	67	135	IKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLRDSDKIPFIREAERLRLKHMADYPDYK

Links
Other Sox family TFs
Other *Gasterosteus aculeatus* TFs

2093 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_066780	Acremonium chrysogenum	ACRE_066780	N	0.000
AOL_s00080g134	Arthrobotrys oligospora	AOL_s00080g134	N	0.000
ARB_04483	Arthroderma benhamiae	ARB_04483	N	0.000
CADAFLAG00007185	Aspergillus flavus	CADAFLAG00007185	N	0.000
ANIA_04527	Aspergillus nidulans	CADANIAG00005913	N	0.000
CADANGAG00006010	Aspergillus niger	CADANGAG00006010	N	0.000
EURHEDRAFT_513113	Aspergillus ruber	EURHEDRAFT_513113	N	0.000
M437DRAFT_11100	Aureobasidium melanogenum	M437DRAFT_11100	N	0.000
M438DRAFT_354688	Aureobasidium pullulans	M438DRAFT_354688	N	0.000
AUEXF2481DRAFT_3955	Aureobasidium subglaciale	AUEXF2481DRAFT_3955	N	0.000
BBA_07468	Beauveria bassiana	BBA_07468	N	0.000
COCC4DRAFT_67427	Bipolaris maydis	COCC4DRAFT_67427	N	0.000
COCMIDRAFT_32035	Bipolaris oryzae	COCMIDRAFT_32035	N	0.000
COCSADRAFT_213051	Bipolaris sorokiniana	COCSADRAFT_213051	N	0.000
COCVIDRAFT_32445	Bipolaris victoriae	COCVIDRAFT_32445	N	0.000
COCCADRAFT_36164	Bipolaris zeicola	COCCADRAFT_36164	N	0.000
BDDG_01950	Blastomyces dermatitidis	BDDG_01950	N	0.000
Bcin13g03650	Botrytis cinerea	Bcin13g03650	N	0.000
PVAR5_1963	Byssochlamys spectabilis	PVAR5_1963	N	0.000
A1O1_07021	Capronia coronata	A1O1_07021	N	0.000
A1O3_04345	Capronia epimyces	A1O3_04345	N	0.000
PV04_02222	Capronia semiimmersa	PV04_02222	N	0.000
CTHT_0072500	Chaetomium thermophilum	CTHT_0072500	N	0.000
G647_09836	Cladophialophora carrionii	G647_09836	N	0.000
A1O5_10244	Cladophialophora psammophila	A1O5_10244	N	0.000
A1O7_02026	Cladophialophora yegresii	A1O7_02026	N	0.000
CPUR_00961	Claviceps purpurea	CPUR_00961	N	0.000
CIMG_04579	Coccidioides immitis	CIMG_04579	N	0.000
CPC735_072140	Coccidioides posadasii	CPC735_072140	N	0.000
estExt_fgenesh1_pg.C_20529	Cochliobolus heterostrophus C5	estExt_fgenesh1_pg.C_20529	N	0.000
CFIO01_11010	Colletotrichum fioriniae	CFIO01_11010	N	0.000
GLRG_11250	Colletotrichum graminicola	GLRG_11250	N	0.000
CH063_09168	Colletotrichum higginsianum	CH063_09168	N	0.000
Cob_05478	Colletotrichum orbiculare	Cob_05478	N	0.000
CSUB01_00740	Colletotrichum sublineola	CSUB01_00740	N	0.000
W97_06487	Coniosporium apollinis	W97_06487	N	0.000
CCM_09116	Cordyceps militaris	CCM_09116	N	0.000
HMPREF1541_07166	Cyphellophora europaea	HMPREF1541_07166	N	0.000
H072_4211	Dactylellina haptotyla	H072_4211	N	0.000
DRE_01470	Drechslerella stenobrocha	DRE_01470	N	0.000
UCREL1_335	Eutypa lata	UCREL1_335	N	0.000
A1O9_06714	Exophiala aquamarina	A1O9_06714	N	0.000
A1O9_11919	Exophiala aquamarina	A1O9_11919	N	0.000
HMPREF1120_04576	Exophiala dermatitidis	HMPREF1120_04576	N	0.000
PV06_07756	Exophiala oligosperma	PV06_07756	N	0.000
Z517_00103	Fonsecaea pedrosoi	Z517_00103	N	0.000
FFUJ_07687	Fusarium fujikuroi	FFUJ_07687	N	0.000
FGRRES_16034	Fusarium graminearum	FGRRES_16034	N	0.000
FOXG_10326	Fusarium oxysporum	FOXG_10326	N	0.000
FPSE_06487	Fusarium pseudograminearum	FPSE_06487	N	0.000
NechaG81687	Fusarium solani	NechaG81687	N	0.000
FVEG_08980	Fusarium verticillioides	FVEG_08980	N	0.000
GGTG_06713	Gaeumannomyces graminis	GGTG_06713	N	0.000
M7I_7845	Glarea lozoyensis	M7I_7845	N	0.000
HCBG_00499	Histoplasma capsulatum	HCBG_00499	N	0.000
LEMA_P068990.1	Leptosphaeria maculans	LEMA_P068990.1	N	0.000
MGG_01133	Magnaporthe oryzae	MGG_01133	N	0.000
MAPG_09781	Magnaporthe poae	MAPG_09781	N	0.000
MBM_06418	Marssonina brunnea	MBM_06418	N	0.000
MAC_01597	Metarhizium acridum	MAC_01597	N	0.000
MAM_00225	Metarhizium album	MAM_00225	N	0.000
MANI_028367	Metarhizium anisopliae	MANI_028367	N	0.000
MBR_02764	Metarhizium brunneum	MBR_02764	N	0.000
MGU_00249	Metarhizium guizhouense	MGU_00249	N	0.000
MAJ_02434	Metarhizium majus	MAJ_02434	N	0.000
X797_000816	Metarhizium robertsii	X797_000816	N	0.000
MCYG_05887	Microsporum canis	MCYG_05887	N	0.000
MGYG_06084	Microsporum gypseum	MGYG_06084	N	0.000
MYCTH_2303193	Myceliophthora thermophila	MYCTH_2303193	N	0.000
estExt_Genewise1.C_130226	Mycosphaerella fijiensis	estExt_Genewise1.C_130226	N	0.000
gw1.1.1628.1	Mycosphaerella graminicola	gw1.1.1628.1	N	0.000
fgenesh1_pg.sca_20_chr6_4_0000313	Nectria haematococca	fgenesh1_pg.sca_20_chr6_4_0000313	N	0.000
NFIA_035340	Neosartorya fischeri	CADNFIAG00003900	N	0.000
NCU05685	Neurospora crassa	NCU05685	N	0.000
estExt_fgenesh3_kg.C_170019	Neurospora discreta	estExt_fgenesh3_kg.C_170019	N	0.000
NEUTE1DRAFT_116766	Neurospora tetrasperma	NEUTE1DRAFT_116766	N	0.000
OIDMADRAFT_54477	Oidiodendron maius	OIDMADRAFT_54477	N	0.000
OCS_06066	Ophiocordyceps sinensis	OCS_06066	N	0.000
F503_02581	Ophiostoma piceae uamh	F503_02581	N	0.000
PABG_01083	Paracoccidioides brasiliensis	PABG_01083	N	0.000
PAAG_06798	Paracoccidioides sp lutzii	PAAG_06798	N	0.000
Pc18g04060	Penicillium chrysogenum	Pc18g04060	N	0.000
PDIP_72040	Penicillium digitatum	PDIP_72040	N	0.000
PEX1_020210	Penicillium expansum	PEX1_020210	N	0.000
PITC_026270	Penicillium italicum	PITC_026270	N	0.000
PMAA_055620	Penicillium marneffei	PMAA_055620	N	0.000
PCH_Pc18g04060	Penicillium rubens	PCH_Pc18g04060	N	0.000
U727_00430521141	Penicillium solitum	U727_00430521141	N	0.000
PFICI_12752	Pestalotiopsis fici	PFICI_12752	N	0.000
SNOG_09798	Phaeosphaeria nodorum	SNOG_09798	N	0.000
PODANS_7_640	Podospora anserina	PODANS_7_640	N	0.000
MYCFIDRAFT_122444	Pseudocercospora fijiensis	MYCFIDRAFT_122444	N	0.000
GMDG_07948	Pseudogymnoascus destructans	GMDG_07948	N	0.000
V499_07295	Pseudogymnoascus pannorum	V499_07295	N	0.000
PTT_05694	Pyrenophora teres	PTT_05694	N	0.000
Z518_02662	Rhinocladiella mackenziei	Z518_02662	N	0.000
SAPIO_CDS2051	Scedosporium apiospermum	SAPIO_CDS2051	N	0.000
SBOR_3944	Sclerotinia borealis	SBOR_3944	N	0.000
SS1G_02499	Sclerotinia sclerotiorum	SS1G_02499	N	0.000
SETTUDRAFT_162912	Setosphaeria turcica	SETTUDRAFT_162912	N	0.000
SMAC_02040	Sordaria macrospora	SMAC_02040	N	0.000
SEPMUDRAFT_40399	Sphaerulina musiva	SEPMUDRAFT_40399	N	0.000
SPBR_00757	Sporothrix brasiliensis	SPBR_00757	N	0.000
HMPREF1624_05570	Sporothrix schenckii	HMPREF1624_05570	N	0.000
S40288_09129	Stachybotrys chartarum	S40288_09129	N	0.000
S40285_03705	Stachybotrys chlorohalonata	S40285_03705	N	0.000
PMAA_055620	Talaromyces marneffei	PMAA_055620	N	0.000
TSTA_016740	Talaromyces stipitatus	TSTA_016740	N	0.000
THITE_2120434	Thielavia terrestris	THITE_2120434	N	0.000
VHEMI07501	Torrubiella hemipterigena	VHEMI07501	N	0.000
TRIATDRAFT_299215	Trichoderma atroviride	TRIATDRAFT_299215	N	0.000
TRIREDRAFT_120908	Trichoderma reesei	TRIREDRAFT_120908	N	0.000
TRIVIDRAFT_216351	Trichoderma virens	TRIVIDRAFT_216351	N	0.000
TEQG_06361	Trichophyton equinum	TEQG_06361	N	0.000
H101_08017	Trichophyton interdigitale	H101_08017	N	0.000
H102_02460	Trichophyton rubrum	H102_02460	N	0.000
H105_02480	Trichophyton soudanense	H105_02480	N	0.000
TESG_07516	Trichophyton tonsurans	TESG_07516	N	0.000
UREG_01787	Uncinocarpus reesii	UREG_01787	N	0.000
UV8b_6562	Ustilaginoidea virens	UV8b_6562	N	0.000
PV09_00457	Verruconis gallopava	PV09_00457	N	0.000
Mycgr3G18562	Zymoseptoria tritici	Mycgr3G18562	N	0.000

sox4a (Gasterosteus aculeatus) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2093 Related TFs

sox4a **(Gasterosteus aculeatus)
Sox**