fgenesh2_kg.6__3081__AT4G11080.1 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh2_kg.6__3081__AT4G11080.1 T329862_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.706 0.917
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.706 0.917
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__3081__AT4G11080.1 Sox 131 198
fgenesh2_kg.6__3081__AT4G11080.1 Sox 248 314
fgenesh2_kg.6__3081__AT4G11080.1 Sox 374 442

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_05988 Ancylostoma caninum ANCCAN_05988 N
ANCCEY_03973 Ancylostoma ceylanicum ANCCEY_03973 N
ACAC_0000464501 Angiostrongylus cantonensis ACAC_0000464501 N
DICVIV_07174 Dictyocaulus viviparus DICVIV_07174 N
TELCIR_12384 Teladorsagia circumcincta TELCIR_12384 N