GRMZM2G066528 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G066528 T330324_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.600 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G066528_P01 Sox 28 97
GRMZM2G066528_P02 Sox 28 97
GRMZM2G066528_P03 Sox 28 97
GRMZM2G066528_P04 Sox 28 97

Links

Other Sox family TFs
Other Zea mays TFs

289 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_12009 Aegilops tauschii F775_12009 I
F775_26161 Aegilops tauschii F775_26161 I
F775_26732 Aegilops tauschii F775_26732 I
AMTR_s00010p00267100 Amborella trichopoda AMTR_s00010p00267100 I
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I
MYB106 Arabidopsis lyrata fgenesh2_kg.3__117__AT3G01140.1 I
ATMYB16 Arabidopsis lyrata fgenesh2_kg.6__1513__AT5G15310.1 I
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I
MYB106 Arabidopsis thaliana AT3G01140 D
MYB39 Arabidopsis thaliana AT4G17785 D
ATMYB16 Arabidopsis thaliana AT5G15310 I
Bostr.1460s0105 Boechera stricta Bostr.1460s0105 I
Bostr.2902s0269 Boechera stricta Bostr.2902s0269 I
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I
BRADI3G36660 Brachypodium distachyon BRADI3G36660 I
BRADI3G38807 Brachypodium distachyon BRADI3G38807 I
BRADI3G58770 Brachypodium distachyon BRADI3G58770 I
BRADI5G12417 Brachypodium distachyon BRADI5G12417 I
Bo1g017860 Brassica oleracea Bo1g017860 I
Bo1g157620 Brassica oleracea Bo1g157620 I
Bo2g012520 Brassica oleracea Bo2g012520 I
Bo3g010230 Brassica oleracea Bo3g010230 I
Bo5g156410 Brassica oleracea Bo5g156410 I
Bo9g164230 Brassica oleracea Bo9g164230 I
Bra006296 Brassica rapa Bra006296 I
Bra008705 Brassica rapa Bra008705 I
Bra021483 Brassica rapa Bra021483 I
Bra023515 Brassica rapa Bra023515 I
Bra039142 Brassica rapa Bra039142 I
Bra040181 Brassica rapa Bra040181 I
PK22137.1 Cannabis sativa PK22137.1 I
PK26207.1 Cannabis sativa PK26207.1 I
Cagra.1036s0022 Capsella grandiflora Cagra.1036s0022 I
Cagra.1085s0031 Capsella grandiflora Cagra.1085s0031 I
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I
Carubv10001433m.g Capsella rubella Carubv10001433m.g I
Carubv10003148m.g Capsella rubella Carubv10003148m.g I
Carubv10006864m.g Capsella rubella Carubv10006864m.g I
Carubv10013887m.g Capsella rubella Carubv10013887m.g I
evm.TU.supercontig_14.102 Carica papaya evm.TU.supercontig_14.102 I
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I
Ca_10504 Cicer arietinum Ca_10504 I
Ca_22367 Cicer arietinum Ca_22367 I
Ca_27606 Cicer arietinum Ca_27606 I
Cla010483 Citrullus lanatus Cla010483 I
Cla016484 Citrullus lanatus Cla016484 I
Cla017248 Citrullus lanatus Cla017248 I
Ciclev10011948m.g Citrus clementina Ciclev10011948m.g I
Ciclev10023440m.g Citrus clementina Ciclev10023440m.g I
Ciclev10026023m.g Citrus clementina Ciclev10026023m.g I
Ciclev10033327m.g Citrus clementina Ciclev10033327m.g I
orange1.1g016708m.g Citrus sinensis orange1.1g016708m.g I
orange1.1g039016m.g Citrus sinensis orange1.1g039016m.g I
orange1.1g045434m.g Citrus sinensis orange1.1g045434m.g I
orange1.1g047101m.g Citrus sinensis orange1.1g047101m.g I
Cucsa.158170 Cucumis sativus Cucsa.158170 I
Cucsa.312940 Cucumis sativus Cucsa.312940 I
Cucsa.338590 Cucumis sativus Cucsa.338590 I
Eucgr.J01362 Eucalyptus grandis Eucgr.J01362 I
Thhalv10014101m.g Eutrema salsugineum Thhalv10014101m.g I
Thhalv10021048m.g Eutrema salsugineum Thhalv10021048m.g I
gene04423-v1.0-hybrid Fragaria vesca gene04423-v1.0-hybrid I
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I
gene30024-v1.0-hybrid Fragaria vesca gene30024-v1.0-hybrid I
GLYMA02G12242 Glycine max GLYMA02G12242 I
GLYMA02G12266 Glycine max GLYMA02G12266 I
GLYMA07G35561 Glycine max GLYMA07G35561 I
GLYMA09G37040 Glycine max GLYMA09G37040 I
GLYMA13G05550 Glycine max GLYMA13G05550 I
GLYMA18G49630 Glycine max GLYMA18G49630 I
GLYMA19G02890 Glycine max GLYMA19G02890 I
GLYMA20G04240 Glycine max GLYMA20G04240 I
Gorai.003G039500 Gossypium raimondii Gorai.003G039500 I
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I
Gorai.008G179600 Gossypium raimondii Gorai.008G179600 I
Gorai.008G179800 Gossypium raimondii Gorai.008G179800 I
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I
Gorai.009G281000 Gossypium raimondii Gorai.009G281000 I
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I
Gorai.012G052500 Gossypium raimondii Gorai.012G052500 I
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
Gorai.013G088300 Gossypium raimondii Gorai.013G088300 I
Gorai.013G088400 Gossypium raimondii Gorai.013G088400 I
MLOC_52134 Hordeum vulgare MLOC_52134 I
MLOC_58915 Hordeum vulgare MLOC_58915 I
LPERR02G26970 Leersia perrieri LPERR02G26970 I
LPERR08G12960 Leersia perrieri LPERR08G12960 I
Lus10015712.g Linum usitatissimum Lus10015712.g I
Lus10019086.g Linum usitatissimum Lus10019086.g I
Lus10026620.g Linum usitatissimum Lus10026620.g I
Lus10033003.g Linum usitatissimum Lus10033003.g I
chr1.CM0141.320.nc Lotus japonicus chr1.CM0141.320.nc I
LjSGA_020545.1 Lotus japonicus LjSGA_020545.1 I
MDP0000121476 Malus domestica MDP0000121476 I
MDP0000204699 Malus domestica MDP0000204699 I
MDP0000228252 Malus domestica MDP0000228252 I
MDP0000274301 Malus domestica MDP0000274301 I
MDP0000278681 Malus domestica MDP0000278681 I
MDP0000302984 Malus domestica MDP0000302984 I
MDP0000320772 Malus domestica MDP0000320772 I
MDP0000574942 Malus domestica MDP0000574942 I
MDP0000716457 Malus domestica MDP0000716457 I
MDP0000742771 Malus domestica MDP0000742771 I
cassava1759.valid.m1 Manihot esculenta cassava1759.valid.m1 I
cassava20416.m1 Manihot esculenta cassava20416.m1 I
cassava360.valid.m1 Manihot esculenta cassava360.valid.m1 I
cassava3811.m1 Manihot esculenta cassava3811.m1 I
cassava44382.m1 Manihot esculenta cassava44382.m1 I
MTR_4g082230 Medicago truncatula MTR_4g082230 I
MTR_4g082290 Medicago truncatula MTR_4g082290 I
MTR_6g012690 Medicago truncatula MTR_6g012690 I
MTR_7g011170 Medicago truncatula MTR_7g011170 I
mgf014886m Mimulus guttatus mgf014886m I
mgf016794m Mimulus guttatus mgf016794m I
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I
GSMUA_Achr10G29680_001 Musa acuminata GSMUA_Achr10G29680_001 I
GSMUA_Achr5G23240_001 Musa acuminata GSMUA_Achr5G23240_001 I
GSMUA_Achr6G02550_001 Musa acuminata GSMUA_Achr6G02550_001 I
GSMUA_Achr7G18410_001 Musa acuminata GSMUA_Achr7G18410_001 I
OBART02G32900 Oryza barthii OBART02G32900 I
OBART04G14990 Oryza barthii OBART04G14990 I
OBART08G15700 Oryza barthii OBART08G15700 I
OB02G39890 Oryza brachyantha OB02G39890 I
OB04G22310 Oryza brachyantha OB04G22310 I
OB08G23170 Oryza brachyantha OB08G23170 I
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I
ORGLA04G0119800 Oryza glaberrima ORGLA04G0119800 I
ORGLA08G0137800 Oryza glaberrima ORGLA08G0137800 I
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I
OGLUM08G16450 Oryza glumaepatula OGLUM08G16450 I
BGIOSGA016547 Oryza indica BGIOSGA016547 I
BGIOSGA026935 Oryza indica BGIOSGA026935 I
OLONG_004507 Oryza longistaminata OLONG_004507 I
OMERI02G31500 Oryza meridionalis OMERI02G31500 I
OMERI08G12990 Oryza meridionalis OMERI08G12990 I
ONIVA02G35050 Oryza nivara ONIVA02G35050 I
ONIVA04G13130 Oryza nivara ONIVA04G13130 I
ONIVA08G16810 Oryza nivara ONIVA08G16810 I
OPUNC02G30360 Oryza punctata OPUNC02G30360 I
OPUNC08G13770 Oryza punctata OPUNC08G13770 I
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I
ORUFI04G16390 Oryza rufipogon ORUFI04G16390 I
ORUFI08G17610 Oryza rufipogon ORUFI08G17610 I
OS04G0461000 Oryza sativa OS04G0461000 I
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I
Pavir.J33881 Panicum virgatum Pavir.J33881 I
e_gw1.106.133.1 Physcomitrella patens e_gw1.106.133.1 I
e_gw1.326.5.1 Physcomitrella patens e_gw1.326.5.1 I
e_gw1.389.9.1 Physcomitrella patens e_gw1.389.9.1 I
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I
POPTR_0007s05360 Populus trichocarpa POPTR_0007s05360 I
POPTR_0008s08870 Populus trichocarpa POPTR_0008s08870 I
POPTR_0008s08920 Populus trichocarpa POPTR_0008s08920 I
POPTR_0010s17300 Populus trichocarpa POPTR_0010s17300 I
POPTR_0017s12230 Populus trichocarpa POPTR_0017s12230 I
Pm002011 Prunus mume Pm002011 I
Pm004557 Prunus mume Pm004557 I
Pm006464 Prunus mume Pm006464 I
Pm015916 Prunus mume Pm015916 I
PRUPE_ppa006769mg Prunus persica PRUPE_ppa006769mg I
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I
PRUPE_ppa026006mg Prunus persica PRUPE_ppa026006mg I
SapurV1A.0063s0570 Salix purpurea SapurV1A.0063s0570 I
SapurV1A.0302s0210 Salix purpurea SapurV1A.0302s0210 I
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I
SapurV1A.0438s0010 Salix purpurea SapurV1A.0438s0010 I
SapurV1A.0801s0120 Salix purpurea SapurV1A.0801s0120 I
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I
SapurV1A.3756s0010 Salix purpurea SapurV1A.3756s0010 I
Si010352m.g Setaria italica Si010352m.g I
Si013994m.g Setaria italica Si013994m.g I
Solyc01g010910.1 Solanum lycopersicum Solyc01g010910.1 I
Solyc02g088190.2 Solanum lycopersicum Solyc02g088190.2 I
Solyc05g007690.1 Solanum lycopersicum Solyc05g007690.1 I
Solyc05g007710.2 Solanum lycopersicum Solyc05g007710.2 I
PGSC0003DMG400001339 Solanum tuberosum PGSC0003DMG400001339 I
PGSC0003DMG400002823 Solanum tuberosum PGSC0003DMG400002823 I
PGSC0003DMG400018412 Solanum tuberosum PGSC0003DMG400018412 I
PGSC0003DMG400018439 Solanum tuberosum PGSC0003DMG400018439 I
PGSC0003DMG400024299 Solanum tuberosum PGSC0003DMG400024299 I
Sb04g027540 Sorghum bicolor Sb04g027540 I
Sb07g021210 Sorghum bicolor Sb07g021210 I
TCM_001102 Theobroma cacao TCM_001102 I
TCM_011658 Theobroma cacao TCM_011658 I
TCM_011659 Theobroma cacao TCM_011659 I
TCM_011660 Theobroma cacao TCM_011660 I
TCM_018639 Theobroma cacao TCM_018639 I
TCM_034902 Theobroma cacao TCM_034902 I
Traes_2AL_097BADCFE Triticum aestivum Traes_2AL_097BADCFE I
Traes_2BL_230A3A2D0 Triticum aestivum Traes_2BL_230A3A2D0 I
Traes_2DL_BDECC07BD Triticum aestivum Traes_2DL_BDECC07BD I
Traes_2DL_C964675DE Triticum aestivum Traes_2DL_C964675DE I
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I
Traes_6AL_52227091B Triticum aestivum Traes_6AL_52227091B I
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I
TRIUR3_01098 Triticum urartu TRIUR3_01098 I
TRIUR3_03772 Triticum urartu TRIUR3_03772 I
TRIUR3_23397 Triticum urartu TRIUR3_23397 I
TRIUR3_25784 Triticum urartu TRIUR3_25784 I
VIT_01s0026g02770 Vitis vinifera VIT_01s0026g02770 I
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I
VIT_14s0108g01080 Vitis vinifera VIT_14s0108g01080 I
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I
VIT_17s0000g06410 Vitis vinifera VIT_17s0000g06410 I
AtMYB93 Vitis vinifera VIT_18s0001g05670 I
GRMZM2G032655 Zea mays GRMZM2G032655 I
GRMZM2G079123 Zea mays GRMZM2G079123 I
GRMZM2G111117 Zea mays GRMZM2G111117 I
GRMZM2G159547 Zea mays GRMZM2G159547 I