GSMUA_Achr3G15060_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_Achr3G15060_001 T330357_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.709 0.778
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.679 0.778
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.679 0.778
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.640 0.622
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.640 0.622
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.622 0.756
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P15060_001 Sox 108 152

Links

Other Sox family TFs
Other Musa acuminata TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI008795 Acyrthosiphon pisum ACYPI008795 I
ENSAMEG00000010346 Ailuropoda melanoleuca ENSAMEG00000010346 I
Alligator_sinensis_CCG000584.1 Alligator sinensis Alligator_sinensis_CCG000584.1 I
Alligator_sinensis_CCG002179.1 Alligator sinensis Alligator_sinensis_CCG002179.1 I
Alligator_sinensis_CCG018819.2 Alligator sinensis Alligator_sinensis_CCG018819.2 I
ENSAPLG00000001132 Anas platyrhynchos ENSAPLG00000001132 I
ENSAPLG00000006596 Anas platyrhynchos ENSAPLG00000006596 I
ANCCAN_07437 Ancylostoma caninum ANCCAN_07437 I
ANCCEY_02986 Ancylostoma ceylanicum ANCCEY_02986 I
ASIM_0001112601 Anisakis simplex ASIM_0001112601 I
MAF Anolis carolinensis ENSACAG00000022476 I
AALB007582 Anopheles albimanus AALB007582 I
ADAC010667 Anopheles darlingi ADAC010667 I
GB54168 Apis mellifera GB54168 I
ENSAMXG00000000734 Astyanax mexicanus ENSAMXG00000000734 I
ENSAMXG00000003234 Astyanax mexicanus ENSAMXG00000003234 I
ENSAMXG00000013869 Astyanax mexicanus ENSAMXG00000013869 I
ENSAMXG00000024937 Astyanax mexicanus ENSAMXG00000024937 I
ACEP11559 Atta cephalotes ACEP11559 I
MAF_AVIS4 Avian musculoaponeurotic fibrosarco MAF_AVIS4 D
BGLB010876 Biomphalaria glabrata BGLB010876 I
ENSBTAP00000053555-D1 Bos grunniens ENSBTAP00000053555-D1 I
MAFB Bos taurus ENSBTAG00000003396 I
MAFA Bos taurus ENSBTAG00000026344 I
MAF Bos taurus ENSBTAG00000044192 I
estExt_GenewiseH_1.C_3410022 Branchiostoma floridae estExt_GenewiseH_1.C_3410022 I
CBG25154 Caenorhabditis briggsae CBG25154 I
maf-1 Caenorhabditis elegans WBGene00077521 I
CRE29626 Caenorhabditis remanei CRE29626 I
MAF Callithrix jacchus ENSCJAG00000018981 I
Aan_R003433 Calypte anna Aan_R003433 I
Cflo_06562--XP_001122224.1_APIME Camponotus floridanus Cflo_06562--XP_001122224.1_APIME I
ENSCAFG00000024903 Canis familiaris ENSCAFG00000024903 I
MAFA Canis familiaris ENSCAFG00000032457 I
MAFA Cavia porcellus ENSCPOG00000021977 I
ENSCPOG00000024116 Cavia porcellus ENSCPOG00000024116 I
ENSCPOG00000027481 Cavia porcellus ENSCPOG00000027481 I
Cmyd_10015204 Chelonia mydas Cmyd_10015204 I
Cmyd_10021098 Chelonia mydas Cmyd_10021098 I
ENSCSAG00000018634 Chlorocebus sabaeus ENSCSAG00000018634 I
ENSCSAG00000018753 Chlorocebus sabaeus ENSCSAG00000018753 I
CLEC000271 Cimex lectularius CLEC000271 I
CpipJ_CPIJ006161 Culex pipiens CpipJ_CPIJ006161 I
CPIJ006161 Culex quinquefasciatus CPIJ006161 I
KGM_10225 Danaus plexippus KGM_10225 I
mafa Danio rerio ENSDARG00000015890 I
mafba Danio rerio ENSDARG00000017121 I
mafbb Danio rerio ENSDARG00000070542 I
mafb Danio rerio ENSDARG00000076520 I
DAPPUDRAFT_231203 Daphnia pulex DAPPUDRAFT_231203 I
MAFB Dasypus novemcinctus ENSDNOG00000009008 I
MAF Dasypus novemcinctus ENSDNOG00000037123 I
GD11529 Drosophila simulans FBgn0183270 I
EVEC_0000854501 Enterobius vermicularis EVEC_0000854501 I
ENSECAG00000018532 Equus caballus ENSECAG00000018532 I
MAF Erinaceus europaeus ENSEEUG00000004490 I
MAFB Felis catus ENSFCAG00000010841 I
ENSFALG00000005612 Ficedula albicollis ENSFALG00000005612 I
ENSFALG00000006844 Ficedula albicollis ENSFALG00000006844 I
ENSFALG00000015256 Ficedula albicollis ENSFALG00000015256 I
ENSGMOG00000001345 Gadus morhua ENSGMOG00000001345 I
ENSGMOG00000012206 Gadus morhua ENSGMOG00000012206 I
ENSGMOG00000016689 Gadus morhua ENSGMOG00000016689 I
ENSGMOG00000017938 Gadus morhua ENSGMOG00000017938 I
ENSGMOG00000018976 Gadus morhua ENSGMOG00000018976 I
MAF Gallus gallus ENSGALG00000026258 I
MAFA Gallus gallus ENSGALG00000026264 I
MAF_CHICK Gallus gallus MAF_CHICK D
maff Gasterosteus aculeatus ENSGACG00000004545 I
mafaa Gasterosteus aculeatus ENSGACG00000005347 I
mafbb Gasterosteus aculeatus ENSGACG00000010185 I
MAF Gasterosteus aculeatus ENSGACG00000012230 I
mafa Gasterosteus aculeatus ENSGACG00000015980 I
Gfo_R016068 Geospiza fortis Gfo_R016068 I
MAFB Gorilla gorilla ENSGGOG00000001226 I
MAFA Gorilla gorilla ENSGGOG00000002831 I
MAF Gorilla gorilla ENSGGOG00000011454 I
HPLM_0000399501 Haemonchus placei HPLM_0000399501 I
HHAL006059-PA Halyomorpha halys HHAL006059-PA I
MAF Homo sapiens ENSG00000178573 D
MAFA Homo sapiens ENSG00000182759 D
MAFB Homo sapiens ENSG00000204103 D
ENSSTOG00000026889 Ictidomys tridecemlineatus ENSSTOG00000026889 I
ENSSTOG00000029174 Ictidomys tridecemlineatus ENSSTOG00000029174 I
ENSLACG00000006698 Latimeria chalumnae ENSLACG00000006698 I
ENSLACG00000009361 Latimeria chalumnae ENSLACG00000009361 I
ENSLACG00000017985 Latimeria chalumnae ENSLACG00000017985 I
ENSLOCG00000000440 Lepisosteus oculatus ENSLOCG00000000440 I
ENSLOCG00000004673 Lepisosteus oculatus ENSLOCG00000004673 I
ENSLOCG00000018124 Lepisosteus oculatus ENSLOCG00000018124 I
LDEC009782 Leptinotarsa decemlineata LDEC009782 I
MAF Loxodonta africana ENSLAFG00000003211 I
MAFB Loxodonta africana ENSLAFG00000006958 I
ENSP00000380167 Macaca fascicularis ENSP00000380167 I
MAFB Macaca mulatta ENSMMUG00000004148 I
ENSMEUG00000004266 Macropus eugenii ENSMEUG00000004266 I
MAFB Meleagris gallopavo ENSMGAG00000003300 I
MAFA Meleagris gallopavo ENSMGAG00000013012 I
Minc00226 Meloidogyne incognita Minc00226 I
ENSMICG00000017086 Microcebus murinus ENSMICG00000017086 I
MAFB Monodelphis domestica ENSMODG00000000534 I
MAF Monodelphis domestica ENSMODG00000008141 I
ENSMPUG00000009792 Mustela putorius furo ENSMPUG00000009792 I
ENSMPUG00000017703 Mustela putorius furo ENSMPUG00000017703 I
Mafa Mus musculus ENSMUSG00000047591 D
Maf Mus musculus ENSMUSG00000055435 D
Mafb Mus musculus ENSMUSG00000074622 D
Myotis_brandtii_MAFA_10006409 Myotis brandtii Myotis_brandtii_MAFA_10006409 I
Myotis_brandtii_MAFA_10035404 Myotis brandtii Myotis_brandtii_MAFA_10035404 I
Myotis_brandtii_Mafb_10025215 Myotis brandtii Myotis_brandtii_Mafb_10025215 I
MAFB Myotis lucifugus ENSMLUG00000003028 I
NV13877 Nasonia vitripennis NV13877 I
ENSNLEG00000006460 Nomascus leucogenys ENSNLEG00000006460 I
ENSNLEG00000010420 Nomascus leucogenys ENSNLEG00000010420 I
MAF Ochotona princeps ENSOPRG00000016293 I
Ocbimv22039773m.g Octopus bimaculoides Ocbimv22039773m.g I
OESDEN_08775 Oesophagostomum dentatum OESDEN_08775 I
OESDEN_13828 Oesophagostomum dentatum OESDEN_13828 I
Ogr01273 Ophisaurus gracilis Ogr01273 I
Ogr02061 Ophisaurus gracilis Ogr02061 I
Ogr06803 Ophisaurus gracilis Ogr06803 I
ENSONIG00000005596 Oreochromis niloticus ENSONIG00000005596 I
ENSONIG00000014852 Oreochromis niloticus ENSONIG00000014852 I
ENSONIG00000020811 Oreochromis niloticus ENSONIG00000020811 I
ENSONIG00000021147 Oreochromis niloticus ENSONIG00000021147 I
ENSONIG00000021195 Oreochromis niloticus ENSONIG00000021195 I
mafba Oryzias latipes ENSORLG00000009479 I
mafb Oryzias latipes ENSORLG00000009643 I
MAF Oryzias latipes ENSORLG00000010298 I
mafbb Oryzias latipes ENSORLG00000013930 I
MAFA Otolemur garnettii ENSOGAG00000013431 I
MAFB Otolemur garnettii ENSOGAG00000030499 I
ENSOGAG00000031340 Otolemur garnettii ENSOGAG00000031340 I
ENSOARG00000001355 Ovis aries ENSOARG00000001355 I
ENSOARG00000008034 Ovis aries ENSOARG00000008034 I
MAF Pan troglodytes ENSPTRG00000008378 I
MAFB Pan troglodytes ENSPTRG00000030557 I
ENSPANG00000005175 Papio anubis ENSPANG00000005175 I
ENSPANG00000007923 Papio anubis ENSPANG00000007923 I
ENSPANG00000016615 Papio anubis ENSPANG00000016615 I
PTRK_0001324900 Parastrongyloides trichosuri PTRK_0001324900 N
ENSPSIG00000000736 Pelodiscus sinensis ENSPSIG00000000736 I
ENSPSIG00000000813 Pelodiscus sinensis ENSPSIG00000000813 I
ENSPFOG00000007436 Poecilia formosa ENSPFOG00000007436 I
ENSPFOG00000017458 Poecilia formosa ENSPFOG00000017458 I
ENSPFOG00000017599 Poecilia formosa ENSPFOG00000017599 I
ENSPFOG00000020839 Poecilia formosa ENSPFOG00000020839 I
ENSPFOG00000023481 Poecilia formosa ENSPFOG00000023481 I
Pvit_08731 Pogona vitticeps Pvit_08731 I
Pvit_15784 Pogona vitticeps Pvit_15784 I
ENSPPYG00000011008 Pongo abelii ENSPPYG00000011008 I
Mafa Rattus norvegicus ENSRNOG00000007668 I
Maf Rattus norvegicus ENSRNOG00000012428 I
Mafb Rattus norvegicus ENSRNOG00000016037 I
RPRC013311 Rhodnius prolixus RPRC013311 I
nRc.2.0.1.g38736 Romanomermis culicivorax nRc.2.0.1.g38736 N
ENSSHAG00000013493 Sarcophilus harrisii ENSSHAG00000013493 I
ENSSHAG00000018460 Sarcophilus harrisii ENSSHAG00000018460 I
L596_g19748 Steinernema carpocapsae L596_g19748 I
L889_g19010 Steinernema feltiae L889_g19010 I
L898_g8988 Steinernema monticolum L898_g8988 I
L892_g30919 Steinernema scapterisci L892_g30919 I
SPAL_0000715500 Strongyloides papillosus SPAL_0000715500 I
SSTP_0000029700 Strongyloides stercoralis SSTP_0000029700 I
SVE_0161000 Strongyloides venezuelensis SVE_0161000 I
SVUK_0001190001 Strongylus vulgaris SVUK_0001190001 I
ENSSSCG00000030898 Sus scrofa ENSSSCG00000030898 I
SMUV_0000634801 Syphacia muris SMUV_0000634801 I
ENSTGUG00000004675 Taeniopygia guttata ENSTGUG00000004675 I
MAFA Taeniopygia guttata ENSTGUG00000012742 I
mafaa Takifugu rubripes ENSTRUG00000001279 I
MAF Takifugu rubripes ENSTRUG00000011245 I
mafbb Takifugu rubripes ENSTRUG00000012552 I
MAF Takifugu rubripes ENSTRUG00000018285 I
ENSTRUG00000018288 Takifugu rubripes ENSTRUG00000018288 I
TELCIR_07015 Teladorsagia circumcincta TELCIR_07015 I
TELCIR_18693 Teladorsagia circumcincta TELCIR_18693 I
mafbb Tetraodon nigroviridis ENSTNIG00000007316 I
mafba Tetraodon nigroviridis ENSTNIG00000017865 I
MAF Tetraodon nigroviridis ENSTNIG00000017941 I
TCNE_0000802301 Toxocara canis TCNE_0000802301 I
MAFB Tursiops truncatus ENSTTRG00000011775 I
mafb.S Xenopus laevis XB-GENE-6085884 I
maf Xenopus tropicalis XB-GENE-6053271 I
mafb Xenopus tropicalis XB-GENE-6085859 I
mafa Xenopus tropicalis XB-GENE-6086265 I
ENSXMAG00000003150 Xiphophorus maculatus ENSXMAG00000003150 I
ENSXMAG00000004753 Xiphophorus maculatus ENSXMAG00000004753 I
ENSXMAG00000019811 Xiphophorus maculatus ENSXMAG00000019811 I
ENSXMAG00000019914 Xiphophorus maculatus ENSXMAG00000019914 I
ENSXMAG00000020173 Xiphophorus maculatus ENSXMAG00000020173 I