GSMUA_Achr8G11580_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_Achr8G11580_001 T330378_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.678 0.955
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.644 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.644 0.886
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr8P11580_001 Sox 132 175

Links

Other Sox family TFs
Other Musa acuminata TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_150877 Agaricus bisporus AGABI2DRAFT_150877 N
BOTBODRAFT_99872 Botryobasidium botryosum BOTBODRAFT_99872 N
CERSUDRAFT_119121 Ceriporiopsis subvermispora CERSUDRAFT_119121 N
CC1G_09335 Coprinopsis cinerea CC1G_09335 N
DACRYDRAFT_114563 Dacryopinax sp DACRYDRAFT_114563 N
FOMPIDRAFT_1034579 Fomitopsis pinicola FOMPIDRAFT_1034579 N
GALMADRAFT_97916 Galerina marginata GALMADRAFT_97916 N
GLOTRDRAFT_120398 Gloeophyllum trabeum GLOTRDRAFT_120398 N
M413DRAFT_446301 Hebeloma cylindrosporum M413DRAFT_446301 N
estExt_fgenesh2_pm.C_30290 Heterobasidion annosum estExt_fgenesh2_pm.C_30290 N
HETIRDRAFT_476261 Heterobasidion irregulare HETIRDRAFT_476261 N
JAAARDRAFT_35324 Jaapia argillacea JAAARDRAFT_35324 N
K443DRAFT_662219 Laccaria amethystina K443DRAFT_662219 N
LACBIDRAFT_313642 Laccaria bicolor LACBIDRAFT_313642 N
Moror_6251 Moniliophthora roreri Moror_6251 N
PAXRUDRAFT_825716 Paxillus rubicundulus PAXRUDRAFT_825716 N
PHACADRAFT_174788 Phanerochaete carnosa PHACADRAFT_174788 N
PHLGIDRAFT_99458 Phlebiopsis gigantea PHLGIDRAFT_99458 N
PILCRDRAFT_824046 Piloderma croceum PILCRDRAFT_824046 N
PISMIDRAFT_28197 Pisolithus microcarpus PISMIDRAFT_28197 N
M404DRAFT_995995 Pisolithus tinctorius M404DRAFT_995995 N
POSPLDRAFT_104953 Postia placenta POSPLDRAFT_104953 N
POSPLDRAFT_104955 Postia placenta POSPLDRAFT_104955 N
V565_091980 Rhizoctonia solani V565_091980 N
SCHCODRAFT_83015 Schizophyllum commune SCHCODRAFT_83015 N
SCLCIDRAFT_13363 Scleroderma citrinum SCLCIDRAFT_13363 N
M408DRAFT_328654 Serendipita vermifera M408DRAFT_328654 N
SERLA73DRAFT_122259 Serpula lacrymans SERLA73DRAFT_122259 N
M422DRAFT_173033 Sphaerobolus stellatus M422DRAFT_173033 N
CY34DRAFT_468895 Suillus luteus CY34DRAFT_468895 N
M407DRAFT_20239 Tulasnella calospora M407DRAFT_20239 N