OMERI06G28030 (Oryza meridionalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OMERI06G28030 T331634_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.645 0.710
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.443 0.420
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.443 0.420
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.437 0.391
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.437 0.391
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI06G28030.1 Sox 42 111

Links

Other Sox family TFs
Other Oryza meridionalis TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_079180 Acremonium chrysogenum ACRE_079180 I 0.000
BBA_04449 Beauveria bassiana BBA_04449 I 0.000
BOTBODRAFT_92498 Botryobasidium botryosum BOTBODRAFT_92498 I 0.000
Bcin07g02960 Botrytis cinerea Bcin07g02960 I 0.000
CHGG_05891 Chaetomium globosum CHGG_05891 I 0.000
CTHT_0009000 Chaetomium thermophilum CTHT_0009000 I 0.000
CPUR_03253 Claviceps purpurea CPUR_03253 I 0.000
CFIO01_10932 Colletotrichum fioriniae CFIO01_10932 I 0.000
CGGC5_4872 Colletotrichum gloeosporioides CGGC5_4872 I 0.000
GLRG_04053 Colletotrichum graminicola GLRG_04053 I 0.000
CH063_09324 Colletotrichum higginsianum CH063_09324 I 0.000
Cob_08105 Colletotrichum orbiculare Cob_08105 I 0.000
CSUB01_03838 Colletotrichum sublineola CSUB01_03838 I 0.000
CCM_07005 Cordyceps militaris CCM_07005 I 0.000
estExt_fgenesh1_pm.C_140003 Cryphonectria parasitica estExt_fgenesh1_pm.C_140003 I 0.000
FFUJ_01365 Fusarium fujikuroi FFUJ_01365 I 0.000
FGRRES_15831 Fusarium graminearum FGRRES_15831 I 0.000
FOXG_00218 Fusarium oxysporum FOXG_00218 I 0.000
FPSE_02604 Fusarium pseudograminearum FPSE_02604 I 0.000
FVEG_01300 Fusarium verticillioides FVEG_01300 I 0.000
GGTG_04163 Gaeumannomyces graminis GGTG_04163 I 0.000
CMQ_8013 Grosmannia clavigera CMQ_8013 I 0.000
MGG_10837 Magnaporthe oryzae MGG_10837 I 0.000
MAPG_00558 Magnaporthe poae MAPG_00558 I 0.000
MAC_04202 Metarhizium acridum MAC_04202 I 0.000
MAM_07644 Metarhizium album MAM_07644 I 0.000
MANI_024675 Metarhizium anisopliae MANI_024675 I 0.000
MBR_03633 Metarhizium brunneum MBR_03633 I 0.000
MGU_04823 Metarhizium guizhouense MGU_04823 I 0.000
MAJ_02156 Metarhizium majus MAJ_02156 I 0.000
X797_003690 Metarhizium robertsii X797_003690 I 0.000
MYCTH_2296905 Myceliophthora thermophila MYCTH_2296905 I 0.000
NCU02957 Neurospora crassa NCU02957 D 0.000
estExt_Genewise1.C_40527 Neurospora discreta estExt_Genewise1.C_40527 I 0.000
NEUTE1DRAFT_150703 Neurospora tetrasperma NEUTE1DRAFT_150703 I 0.000
OIDMADRAFT_57256 Oidiodendron maius OIDMADRAFT_57256 I 0.000
OIDMADRAFT_110480 Oidiodendron maius OIDMADRAFT_110480 I 0.000
F503_01009 Ophiostoma piceae uamh F503_01009 I 0.000
PFICI_01786 Pestalotiopsis fici PFICI_01786 I 0.000
PODANS_1_18420 Podospora anserina PODANS_1_18420 I 0.000
SAPIO_CDS5040 Scedosporium apiospermum SAPIO_CDS5040 I 0.000
SBOR_5241 Sclerotinia borealis SBOR_5241 I 0.000
SS1G_01995 Sclerotinia sclerotiorum SS1G_01995 I 0.000
SMAC_00493 Sordaria macrospora SMAC_00493 I 0.000
SPBR_01576 Sporothrix brasiliensis SPBR_01576 I 0.000
HMPREF1624_03694 Sporothrix schenckii HMPREF1624_03694 I 0.000
S40288_08146 Stachybotrys chartarum S40288_08146 I 0.000
S40285_00887 Stachybotrys chlorohalonata S40285_00887 I 0.000
THITE_2112332 Thielavia terrestris THITE_2112332 I 0.000
TRIATDRAFT_299973 Trichoderma atroviride TRIATDRAFT_299973 I 0.000
TRIREDRAFT_122371 Trichoderma reesei TRIREDRAFT_122371 I 0.000
TRIVIDRAFT_35604 Trichoderma virens TRIVIDRAFT_35604 I 0.000
UV8b_5697 Ustilaginoidea virens UV8b_5697 I 0.000
VDBG_06134 Verticillium albo atrum VDBG_06134 I 0.000
VDBG_06134 Verticillium alfalfae VDBG_06134 I 0.000
VDAG_03292 Verticillium dahliae VDAG_03292 I 0.000