PHACADRAFT_30138 (Phanerochaete carnosa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PHACADRAFT_30138 T331894_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.448 0.420
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.448 0.420
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.448 0.420
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.448 0.420
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.448 0.420
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.443 0.275
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.443 0.275
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.416 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKM53046 Sox 154 223

Links

Other Sox family TFs
Other Phanerochaete carnosa TFs

402 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G26980 Brachypodium distachyon BRADI1G26980 N 0.000
MLOC_2737 Hordeum vulgare MLOC_2737 N 0.000
ORGLA07G0123500 Oryza glaberrima ORGLA07G0123500 N 0.000
BGIOSGA024272 Oryza indica BGIOSGA024272 N 0.000
OLONG_010536 Oryza longistaminata OLONG_010536 N 0.000
OS07G0496300 Oryza sativa OS07G0496300 N 0.000
Pavir.Ba00914 Panicum virgatum Pavir.Ba00914 N 0.000
Pavir.J10702 Panicum virgatum Pavir.J10702 N 0.000
Si033400m.g Setaria italica Si033400m.g N 0.000
Sb02g033910 Sorghum bicolor Sb02g033910 N 0.000
Traes_2AS_1683BEFD0 Triticum aestivum Traes_2AS_1683BEFD0 N 0.000
GRMZM2G406651 Zea mays GRMZM2G406651 N 0.000