TCM_016416 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_016416 T332828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.519 0.712
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.519 0.712
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY24967 Sox 179 247
EOY24967 Sox 295 361
EOY24967 Sox 420 488
EOY24968 Sox 179 247
EOY24968 Sox 295 352

Links

Other Sox family TFs
Other Theobroma cacao TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000861 Ailuropoda melanoleuca ENSAMEG00000000861 N
Alligator_sinensis_CCG002326.1 Alligator sinensis Alligator_sinensis_CCG002326.1 N
ENSAPLG00000009042 Anas platyrhynchos ENSAPLG00000009042 N
DMTF1 Anolis carolinensis ENSACAG00000001448 N
Afo_R015331 Aptenodytes forsteri Afo_R015331 N
DMTF1 Bos taurus ENSBTAG00000020878 N
Brh_R003353 Buceros rhinoceros Brh_R003353 N
DMTF1 Callithrix jacchus ENSCJAG00000014730 N
Aan_R000489 Calypte anna Aan_R000489 N
DMTF1 Canis familiaris ENSCAFG00000001819 N
DMTF1 Cavia porcellus ENSCPOG00000002780 N
ENSCSAG00000012356 Chlorocebus sabaeus ENSCSAG00000012356 N
CGI_10017105 Crassostrea gigas CGI_10017105 N
dmtf1 Danio rerio ENSDARG00000025824 N
ENSDORG00000010983 Dipodomys ordii ENSDORG00000010983 N
DMTF1 Echinops telfairi ENSETEG00000018444 N
DMTF1 Equus caballus ENSECAG00000020746 N
DMTF1 Erinaceus europaeus ENSEEUG00000012844 N
DMTF1 Felis catus ENSFCAG00000013756 N
ENSFALG00000001933 Ficedula albicollis ENSFALG00000001933 N
ENSGALG00000006628 Gallus gallus ENSGALG00000006628 N
Gfo_R011500 Geospiza fortis Gfo_R011500 N
DMTF1 Gorilla gorilla ENSGGOG00000002781 N
DMTF1 Homo sapiens ENSG00000135164 N
ENSSTOG00000010351 Ictidomys tridecemlineatus ENSSTOG00000010351 N
ENSLACG00000013017 Latimeria chalumnae ENSLACG00000013017 N
DMTF1 Loxodonta africana ENSLAFG00000004637 N
ENSP00000332171 Macaca fascicularis ENSP00000332171 N
DMTF1 Macaca mulatta ENSMMUG00000010781 N
DMTF1 Meleagris gallopavo ENSMGAG00000005151 N
DMTF1 Monodelphis domestica ENSMODG00000016953 N
ENSMPUG00000018305 Mustela putorius furo ENSMPUG00000018305 N
Dmtf1 Mus musculus ENSMUSG00000042508 N
Myotis_brandtii_DMTF1_10006608 Myotis brandtii Myotis_brandtii_DMTF1_10006608 N
DMTF1 Myotis lucifugus ENSMLUG00000017083 N
NEMVEDRAFT_v1g22981 Nematostella vectensis NEMVEDRAFT_v1g22981 N
ENSNLEG00000014921 Nomascus leucogenys ENSNLEG00000014921 N
Ogr14649 Ophisaurus gracilis Ogr14649 N
ENSONIG00000009949 Oreochromis niloticus ENSONIG00000009949 N
DMTF1 Ornithorhynchus anatinus ENSOANG00000015391 N
DMTF1 Oryctolagus cuniculus ENSOCUG00000009179 N
DMTF1 Otolemur garnettii ENSOGAG00000000022 N
ENSOARG00000014574 Ovis aries ENSOARG00000014574 N
DMTF1 Pan troglodytes ENSPTRG00000019364 N
ENSPANG00000011083 Papio anubis ENSPANG00000011083 N
ENSPSIG00000016443 Pelodiscus sinensis ENSPSIG00000016443 N
ENSPMAG00000004094 Petromyzon marinus ENSPMAG00000004094 N
ENSPPYG00000017849 Pongo abelii ENSPPYG00000017849 N
DMTF1 Procavia capensis ENSPCAG00000014639 N
DMTF1 Pteropus vampyrus ENSPVAG00000007410 N
Dmtf1 Rattus norvegicus ENSRNOG00000005908 N
Sakowv30027682m.g Saccoglossus kowalevskii Sakowv30027682m.g N
ENSSHAG00000018587 Sarcophilus harrisii ENSSHAG00000018587 N
DMTF1 Sorex araneus ENSSARG00000002410 N
SMAR006666 Strigamia maritima SMAR006666 N
DMTF1 Sus scrofa ENSSSCG00000015393 N
DMTF1 Taeniopygia guttata ENSTGUG00000002365 N
dmtf1 Tetraodon nigroviridis ENSTNIG00000018722 N
DMTF1 Tursiops truncatus ENSTTRG00000006785 N
Tal_R002829 Tyto alba Tal_R002829 N
DMTF1 Vicugna pacos ENSVPAG00000009890 N
XP_002935299 Xenopus tropicalis XP_002935299 N