YAB2 (Vitis vinifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VIT_06s0009g00880 T333234_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.702 0.932
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.673 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.673 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.682
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_06s0009g00880.t01 Sox 109 152

Links

Other Sox family TFs
Other Vitis vinifera TFs

530 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004806 Ailuropoda melanoleuca ENSAMEG00000004806 N
ENSBTAP00000001247-D1 Bos grunniens ENSBTAP00000001247-D1 N
ENSBTAG00000000943 Bos taurus ENSBTAG00000000943 N
ENSCJAG00000004366 Callithrix jacchus ENSCJAG00000004366 N
ENSCAFG00000031764 Canis familiaris ENSCAFG00000031764 N
ENSCPOG00000012429 Cavia porcellus ENSCPOG00000012429 N
ENSCSAG00000008839 Chlorocebus sabaeus ENSCSAG00000008839 N
ENSDNOG00000047188 Dasypus novemcinctus ENSDNOG00000047188 N
ENSDORG00000003193 Dipodomys ordii ENSDORG00000003193 N
ENSETEG00000005043 Echinops telfairi ENSETEG00000005043 N
ENSECAG00000002943 Equus caballus ENSECAG00000002943 N
ENSFCAG00000029151 Felis catus ENSFCAG00000029151 N
ENSGGOG00000022789 Gorilla gorilla ENSGGOG00000022789 N
ZNF286A Homo sapiens ENSG00000187607 N
ENSSTOG00000024669 Ictidomys tridecemlineatus ENSSTOG00000024669 N
ENSLAFG00000016102 Loxodonta africana ENSLAFG00000016102 N
ENSMMUP00000003150 Macaca fascicularis ENSMMUP00000003150 N
ENSMMUG00000002354 Macaca mulatta ENSMMUG00000002354 N
ENSMPUG00000010104 Mustela putorius furo ENSMPUG00000010104 N
Zfp286 Mus musculus ENSMUSG00000047342 N
ENSMLUG00000015932 Myotis lucifugus ENSMLUG00000015932 N
ENSNLEG00000014652 Nomascus leucogenys ENSNLEG00000014652 N
ENSOPRG00000013892 Ochotona princeps ENSOPRG00000013892 N
ENSOCUG00000024037 Oryctolagus cuniculus ENSOCUG00000024037 N
ENSOGAG00000005719 Otolemur garnettii ENSOGAG00000005719 N
ENSOARG00000016792 Ovis aries ENSOARG00000016792 N
ZNF286A Pan troglodytes ENSPTRG00000008803 N
ENSPANG00000023728 Papio anubis ENSPANG00000023728 N
ENSPPYG00000029913 Pongo abelii ENSPPYG00000029913 N
ENSPVAG00000015636 Pteropus vampyrus ENSPVAG00000015636 N
Zfp286a Rattus norvegicus ENSRNOG00000003218 N
ENSSSCG00000018029 Sus scrofa ENSSSCG00000018029 N
ENSTSYG00000002897 Tarsius syrichta ENSTSYG00000002897 N
ENSTTRG00000017194 Tursiops truncatus ENSTTRG00000017194 N
ENSVPAG00000012293 Vicugna pacos ENSVPAG00000012293 N