Pm001547 (Prunus mume)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pm001547 T333831_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.737 0.955
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.955
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.955
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.682
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm001547 Sox 116 159

Links

Other Sox family TFs
Other Prunus mume TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M378DRAFT_163769 Amanita muscaria M378DRAFT_163769 N
ARB_03466 Arthroderma benhamiae ARB_03466 I
MCYG_03330 Arthroderma otae MCYG_03330 I
ACLA_043000 Aspergillus clavatus CADACLAG00004293 N
CADAFLAG00012828 Aspergillus flavus CADAFLAG00012828 N
AFUA_8G02710 Aspergillus fumigatus CADAFUAG00001018 N
ANIA_08885 Aspergillus nidulans CADANIAG00007984 N
CADAORAG00004794 Aspergillus oryzae CADAORAG00004794 N
EURHEDRAFT_459391 Aspergillus ruber EURHEDRAFT_459391 N
ATEG_10383 Aspergillus terreus CADATEAG00001854 N
BDDG_07949 Blastomyces dermatitidis BDDG_07949 I
BOTBODRAFT_138635 Botryobasidium botryosum BOTBODRAFT_138635 N
PVAR5_8290 Byssochlamys spectabilis PVAR5_8290 N
PVAR5_8495 Byssochlamys spectabilis PVAR5_8495 I
CERSUDRAFT_119740 Ceriporiopsis subvermispora CERSUDRAFT_119740 N
CIMG_01795 Coccidioides immitis CIMG_01795 I
CPC735_046980 Coccidioides posadasii CPC735_046980 I
EPUS_08235 Endocarpon pusillum EPUS_08235 I
EPUS_00435 Endocarpon pusillum EPUS_00435 N
PV06_01512 Exophiala oligosperma PV06_01512 N
FIBRA_02145 Fibroporia radiculosa FIBRA_02145 N
GALMADRAFT_256803 Galerina marginata GALMADRAFT_256803 I
GLOTRDRAFT_117339 Gloeophyllum trabeum GLOTRDRAFT_117339 N
GLOTRDRAFT_62199 Gloeophyllum trabeum GLOTRDRAFT_62199 N
M413DRAFT_446160 Hebeloma cylindrosporum M413DRAFT_446160 I
M413DRAFT_412939 Hebeloma cylindrosporum M413DRAFT_412939 N
estExt_fgenesh3_kg.C_170048 Heterobasidion annosum estExt_fgenesh3_kg.C_170048 N
HCBG_02620 Histoplasma capsulatum HCBG_02620 I
HYDPIDRAFT_117261 Hydnomerulius pinastri HYDPIDRAFT_117261 N
K443DRAFT_683891 Laccaria amethystina K443DRAFT_683891 N
K443DRAFT_683893 Laccaria amethystina K443DRAFT_683893 N
K443DRAFT_685043 Laccaria amethystina K443DRAFT_685043 N
LACBIDRAFT_296682 Laccaria bicolor LACBIDRAFT_296682 I
LACBIDRAFT_296690 Laccaria bicolor LACBIDRAFT_296690 N
LACBIDRAFT_315220 Laccaria bicolor LACBIDRAFT_315220 N
LACBIDRAFT_317921 Laccaria bicolor LACBIDRAFT_317921 I
MCYG_03330 Microsporum canis MCYG_03330 I
MGYG_00493 Microsporum gypseum MGYG_00493 I
E5Q_05532 Mixia osmundae E5Q_05532 N
Moror_3407 Moniliophthora roreri Moror_3407 I
estExt_fgeneshMC_pg.C_50901 Mucor circinelloides estExt_fgeneshMC_pg.C_50901 N
PAXINDRAFT_100848 Paxillus involutus PAXINDRAFT_100848 N
PAXINDRAFT_169439 Paxillus involutus PAXINDRAFT_169439 N
PAXINDRAFT_172061 Paxillus involutus PAXINDRAFT_172061 N
PAXRUDRAFT_10160 Paxillus rubicundulus PAXRUDRAFT_10160 N
PAXRUDRAFT_153943 Paxillus rubicundulus PAXRUDRAFT_153943 N
Pc16g00930 Penicillium chrysogenum Pc16g00930 N
Pc18g05390 Penicillium chrysogenum Pc18g05390 I
PDIP_71050 Penicillium digitatum PDIP_71050 I
PEX1_105370 Penicillium expansum PEX1_105370 N
PEX1_071460 Penicillium expansum PEX1_071460 I
PITC_092550 Penicillium italicum PITC_092550 I
PITC_009530 Penicillium italicum PITC_009530 N
PMAA_060820 Penicillium marneffei PMAA_060820 N
PMAA_044700 Penicillium marneffei PMAA_044700 I
PDE_05378 Penicillium oxalicum PDE_05378 I
PDE_06878 Penicillium oxalicum PDE_06878 N
PCH_Pc18g05390 Penicillium rubens PCH_Pc18g05390 I
PCH_Pc16g00930 Penicillium rubens PCH_Pc16g00930 N
U727_00431840181 Penicillium solitum U727_00431840181 N
U727_00431305611 Penicillium solitum U727_00431305611 I
estExt_fgeneshPB_pg.C_390043 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_390043 N
PILCRDRAFT_789690 Piloderma croceum PILCRDRAFT_789690 N
M404DRAFT_1005658 Pisolithus tinctorius M404DRAFT_1005658 I
PLEOSDRAFT_1047166 Pleurotus ostreatus PLEOSDRAFT_1047166 N
PLICRDRAFT_57185 Plicaturopsis crispa PLICRDRAFT_57185 N
SCHCODRAFT_269951 Schizophyllum commune SCHCODRAFT_269951 N
SPBC530.08 Schizosaccharomyces pombe SPBC530.08 N
SERLA73DRAFT_65877 Serpula lacrymans SERLA73DRAFT_65877 I
SERLA73DRAFT_99356 Serpula lacrymans SERLA73DRAFT_99356 N
CY34DRAFT_88611 Suillus luteus CY34DRAFT_88611 N
PMAA_060820 Talaromyces marneffei PMAA_060820 N
PMAA_044700 Talaromyces marneffei PMAA_044700 I
TSTA_033840 Talaromyces stipitatus TSTA_033840 I
K437DRAFT_34553 Tilletiaria anomala K437DRAFT_34553 I
TEQG_00844 Trichophyton equinum TEQG_00844 I
H101_03088 Trichophyton interdigitale H101_03088 I
H102_08460 Trichophyton rubrum H102_08460 I
H105_08489 Trichophyton soudanense H105_08489 I
TRV_06120 Trichophyton verrucosum TRV_06120 I
UREG_05491 Uncinocarpus reesii UREG_05491 I
VDBG_00235 Verticillium albo atrum VDBG_00235 I
VDBG_00235 Verticillium alfalfae VDBG_00235 I
WALSEDRAFT_58028 Wallemia sebi WALSEDRAFT_58028 N
WALSEDRAFT_65411 Wallemia sebi WALSEDRAFT_65411 I