Cucsa.272190 (Cucumis sativus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cucsa.272190 T333954_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.666 0.768
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.434 0.435
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.434 0.435
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.434 0.391
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.434 0.391
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.272190.1 Sox 39 108
Cucsa.272190.2 Sox 39 108
Cucsa.272190.3 Sox 39 108
Cucsa.272190.4 Sox 39 104
Cucsa.272190.5 Sox 39 108

Links

Other Sox family TFs
Other Cucumis sativus TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CaO19.7800 Candida albicans CaO19.7800 I
CaO19.166 Candida albicans CaO19.166 I
CD36_27510 Candida dubliniensis CD36_27510 I
CAGL0G08844g Candida glabrata CAGL0G08844g I
PGUG_04028 Candida guilliermondii PGUG_04028 I
CLUG_02747 Candida lusitaniae CLUG_02747 I
G210_0569 Candida maltosa G210_0569 I
CPAG_01303 Candida parapsilosis CPAG_01303 I
CANTEDRAFT_104606 Candida tenuis CANTEDRAFT_104606 I
CTRG_00843 Candida tropicalis CTRG_00843 I
CTRG_05934 Candida tropicalis CTRG_05934 I
A1O1_07807 Capronia coronata A1O1_07807 N
CLUG_02747 Clavispora lusitaniae CLUG_02747 I
DEHA2A12892g Debaryomyces hansenii DEHA2A12892g I
KAFR_0J01710 Kazachstania africana KAFR_0J01710 I
KNAG_0E01760 Kazachstania naganishii KNAG_0E01760 I
KLLA0_F04609g Kluyveromyces lactis KLLA0_F04609g I
KLTH0G09108g Kluyveromyces thermotolerans KLTH0G09108g I
Kwal_4754 Kluyveromyces waltii Kwal_4754 I
KUCA_T00002124001 Kuraishia capsulata KUCA_T00002124001 I
SAKL0C03938g Lachancea kluyveri SAKL0C03938g I
SAKL0E08998g Lachancea kluyveri SAKL0E08998g I
LALA0_S04e08614g Lachancea lanzarotensis LALA0_S04e08614g I
KLTH0G09108g Lachancea thermotolerans KLTH0G09108g I
LELG_00217 Lodderomyces elongisporus LELG_00217 I
PGUG_04028 Meyerozyma guilliermondii PGUG_04028 I
GNLVRS01_PISO0J02957g Millerozyma farinosa GNLVRS01_PISO0J02957g I
GNLVRS01_PISO0F02997g Millerozyma farinosa GNLVRS01_PISO0F02997g I
Moror_2492 Moniliophthora roreri Moror_2492 I
NCAS_0B06550 Naumovozyma castellii NCAS_0B06550 I
NDAI_0B03850 Naumovozyma dairenensis NDAI_0B03850 I
estExt_genewise1_worm.C_chr_3.11235 Pichia stipitis estExt_genewise1_worm.C_chr_3.11235 I
PaG_01650 Pseudozyma aphidis PaG_01650 I
PSEUBRA_SCAF1g00170 Pseudozyma brasiliensis PSEUBRA_SCAF1g00170 I
PHSY_004266 Pseudozyma hubeiensis PHSY_004266 I
SU7_1579 Saccharomyces arboricola SU7_1579 I
11848_Multiple Saccharomyces bayanus 11848_Multiple I
Scas_Contig662.8 Saccharomyces castellii Scas_Contig662.8 I
ASG1 Saccharomyces cerevisiae YIL130W D
10452_Multiple Saccharomyces mikatae 10452_Multiple I
10716_YIL130W Saccharomyces paradoxus 10716_YIL130W I
PICST_77168 Scheffersomyces stipitis PICST_77168 I
SPAPADRAFT_49410 Spathaspora passalidarum SPAPADRAFT_49410 I
sr11453 Sporisorium reilianum sr11453 I
TBLA_0G02610 Tetrapisispora blattae TBLA_0G02610 I
TDEL_0C04480 Torulaspora delbrueckii TDEL_0C04480 I
UHOR_00180 Ustilago hordei UHOR_00180 I
UM00113 Ustilago maydis UM00113 I
Kpol_1039p11 Vanderwaltozyma polyspora Kpol_1039p11 I
VDBG_07983 Verticillium albo atrum VDBG_07983 N
VDBG_07983 Verticillium alfalfae VDBG_07983 N
VDAG_05552 Verticillium dahliae VDAG_05552 N
BN7_630 Wickerhamomyces ciferrii BN7_630 I
BN7_2731 Wickerhamomyces ciferrii BN7_2731 I
YALI0_C22990g Yarrowia lipolytica YALI0_C22990g I