estExt_fgenesh2_pg.C_2300011 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh2_pg.C_2300011 T334018_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.626 0.725
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_2300011 Sox 125 193

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB12G25170 Oryza brachyantha OB12G25170 N 0.000
BGIOSGA037778 Oryza indica BGIOSGA037778 N 0.000
Pavir.J34789 Panicum virgatum Pavir.J34789 N 0.000