estExt_Genewise1Plus.C_21097 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_Genewise1Plus.C_21097 T334071_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_21097 Sox 26 94
estExt_Genewise1Plus.C_21097 Sox 111 179

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I
Bo2g133550 Brassica oleracea Bo2g133550 I
Bra022149 Brassica rapa Bra022149 I
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I
Carubv10027995m.g Capsella rubella Carubv10027995m.g I
Ca_07908 Cicer arietinum Ca_07908 N
Cla009202 Citrullus lanatus Cla009202 N
Cucsa.180580 Cucumis sativus Cucsa.180580 N
GLYMA15G12591 Glycine max GLYMA15G12591 N
GLYMA09G01670 Glycine max GLYMA09G01670 N
MLOC_14207 Hordeum vulgare MLOC_14207 I
LjSGA_128947.1 Lotus japonicus LjSGA_128947.1 N
MDP0000122269 Malus domestica MDP0000122269 I
MDP0000306730 Malus domestica MDP0000306730 N
MTR_2g026725 Medicago truncatula MTR_2g026725 I
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I
PRUPE_ppa026454mg Prunus persica PRUPE_ppa026454mg N
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I