Cagra.0537s0004 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.0537s0004 T334399_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.741 1.000
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.741 1.000
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.660 0.689
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.630 0.644
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.630 0.644
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.560 0.578
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0537s0004.1.p Sox 114 158

Links

Other Sox family TFs
Other Capsella grandiflora TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CaO19.11700 Candida albicans CaO19.11700 I 0.000
CaO19.4225 Candida albicans CaO19.4225 I 0.000
CD36_52000 Candida dubliniensis CD36_52000 I 0.000
CAGL0H00396g Candida glabrata CAGL0H00396g I 0.000
G210_1528 Candida maltosa G210_1528 I 0.000
CORT_0B02970 Candida orthopsilosis CORT_0B02970 I 0.000
CPAG_00528 Candida parapsilosis CPAG_00528 I 0.000
CANTEDRAFT_103499 Candida tenuis CANTEDRAFT_103499 I 0.000
CTRG_03202 Candida tropicalis CTRG_03202 I 0.000
DEHA2E10120g Debaryomyces hansenii DEHA2E10120g I 0.000
Ecym_7203 Eremothecium cymbalariae Ecym_7203 I 0.000
KNAG_0D05240 Kazachstania naganishii KNAG_0D05240 I 0.000
KLTH0F18392g Kluyveromyces thermotolerans KLTH0F18392g I 0.000
Kwal_21884 Kluyveromyces waltii Kwal_21884 I 0.000
PAS_chr3_0759 Komagataella pastoris PAS_chr3_0759 N 0.000
SAKL0F15444g Lachancea kluyveri SAKL0F15444g I 0.000
LALA0_S01e18382g Lachancea lanzarotensis LALA0_S01e18382g I 0.000
KLTH0F18392g Lachancea thermotolerans KLTH0F18392g I 0.000
LELG_03934 Lodderomyces elongisporus LELG_03934 I 0.000
GNLVRS01_PISO0L11297g Millerozyma farinosa GNLVRS01_PISO0L11297g I 0.000
GNLVRS01_PISO0K11296g Millerozyma farinosa GNLVRS01_PISO0K11296g I 0.000
NCAS_0H00270 Naumovozyma castellii NCAS_0H00270 I 0.000
NDAI_0D00220 Naumovozyma dairenensis NDAI_0D00220 I 0.000
HPODL_00249 Ogataea parapolymorpha HPODL_00249 I 0.000
XP_002492988.1 Pichia pastoris XP_002492988.1 N 0.000
e_gww1.5.1.126.1 Pichia stipitis e_gww1.5.1.126.1 I 0.000
SU7_2407 Saccharomyces arboricola SU7_2407 I 0.000
17250_YLR451W Saccharomyces bayanus 17250_YLR451W I 0.000
Scas_Contig691.32 Saccharomyces castellii Scas_Contig691.32 I 0.000
LEU3 Saccharomyces cerevisiae YLR451W D 0.000
15505_Multiple Saccharomyces mikatae 15505_Multiple I 0.000
15147_YLR451W Saccharomyces paradoxus 15147_YLR451W I 0.000
SPAPADRAFT_152650 Spathaspora passalidarum SPAPADRAFT_152650 I 0.000
TBLA_0F02920 Tetrapisispora blattae TBLA_0F02920 I 0.000
TPHA_0G00380 Tetrapisispora phaffii TPHA_0G00380 I 0.000
TDEL_0H00590 Torulaspora delbrueckii TDEL_0H00590 I 0.000
Kpol_1008p13 Vanderwaltozyma polyspora Kpol_1008p13 I 0.000
BN7_4573 Wickerhamomyces ciferrii BN7_4573 I 0.000
ZBAI_01033 Zygosaccharomyces bailii ZBAI_01033 I 0.000
ZBAI_07505 Zygosaccharomyces bailii ZBAI_07505 I 0.000
ZYRO0D01650g Zygosaccharomyces rouxii ZYRO0D01650g I 0.000