Gorai.009G016700 (Gossypium raimondii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gorai.009G016700 T334547_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.741 1.000
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.741 1.000
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.630 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.630 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G016700.1 Sox 111 154
Gorai.009G016700.2 Sox 104 147

Links

Other Sox family TFs
Other Gossypium raimondii TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB06533.1 Alternaria brassicicola AB06533.1 N
M437DRAFT_67933 Aureobasidium melanogenum M437DRAFT_67933 I
M438DRAFT_155623 Aureobasidium pullulans M438DRAFT_155623 I
AUEXF2481DRAFT_374368 Aureobasidium subglaciale AUEXF2481DRAFT_374368 I
COCC4DRAFT_46985 Bipolaris maydis COCC4DRAFT_46985 N
COCMIDRAFT_8999 Bipolaris oryzae COCMIDRAFT_8999 N
COCSADRAFT_25239 Bipolaris sorokiniana COCSADRAFT_25239 N
COCVIDRAFT_37014 Bipolaris victoriae COCVIDRAFT_37014 N
COCCADRAFT_82274 Bipolaris zeicola COCCADRAFT_82274 N
CTHT_0068480 Chaetomium thermophilum CTHT_0068480 I
estExt_fgenesh1_pg.C_40234 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_40234 N
DOTSEDRAFT_68376 Dothistroma septosporum DOTSEDRAFT_68376 I
UCREL1_10245 Eutypa lata UCREL1_10245 I
LEMA_P115290.1 Leptosphaeria maculans LEMA_P115290.1 N
MPH_08875 Macrophomina phaseolina MPH_08875 N
estExt_Genewise1.C_12176 Mycosphaerella fijiensis estExt_Genewise1.C_12176 I
UCRNP2_458 Neofusicoccum parvum UCRNP2_458 N
col-26 Neurospora crassa NCU07788 D
estExt_Genewise1Plus.C_140234 Neurospora discreta estExt_Genewise1Plus.C_140234 I
NEUTE1DRAFT_59081 Neurospora tetrasperma NEUTE1DRAFT_59081 I
MYCFIDRAFT_127068 Pseudocercospora fijiensis MYCFIDRAFT_127068 I
PTT_02079 Pyrenophora teres PTT_02079 N
SETTUDRAFT_174289 Setosphaeria turcica SETTUDRAFT_174289 N
SMAC_08231 Sordaria macrospora SMAC_08231 I
SEPMUDRAFT_146091 Sphaerulina musiva SEPMUDRAFT_146091 I
PV09_00811 Verruconis gallopava PV09_00811 N
Mycgr3G107320 Zymoseptoria tritici Mycgr3G107320 I