Lus10030892.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10030892.g T334578_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.614 0.725
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.585 0.600
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.585 0.600
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.584 0.700
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.584 0.700
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.800
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10030892 Sox 60 99

Links

Other Sox family TFs
Other Linum usitatissimum TFs

474 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_068200 Acremonium chrysogenum ACRE_068200 I 0.000
AB00291.1 Alternaria brassicicola AB00291.1 I 0.000
AB03633.1 Alternaria brassicicola AB03633.1 I 0.000
AOL_s00076g698 Arthrobotrys oligospora AOL_s00076g698 I 0.000
AOL_s00086g1 Arthrobotrys oligospora AOL_s00086g1 I 0.000
ARB_07830 Arthroderma benhamiae ARB_07830 N 0.000
MCYG_01011 Arthroderma otae MCYG_01011 I 0.000
AGOS_AER370W Ashbya gossypii AGOS_AER370W I 0.000
ACLA_039870 Aspergillus clavatus CADACLAG00003667 I 0.000
CADAFLAG00002428 Aspergillus flavus CADAFLAG00002428 I 0.000
AFUA_3G11990 Aspergillus fumigatus CADAFUAG00005328 I 0.000
ANIA_02852 Aspergillus nidulans CADANIAG00010238 I 0.000
CADANGAG00002302 Aspergillus niger CADANGAG00002302 I 0.000
CADAORAG00001356 Aspergillus oryzae CADAORAG00001356 I 0.000
EURHEDRAFT_457145 Aspergillus ruber EURHEDRAFT_457145 I 0.000
ATEG_04743 Aspergillus terreus CADATEAG00006676 I 0.000
M437DRAFT_43351 Aureobasidium melanogenum M437DRAFT_43351 I 0.000
M438DRAFT_374425 Aureobasidium pullulans M438DRAFT_374425 I 0.000
AUEXF2481DRAFT_64674 Aureobasidium subglaciale AUEXF2481DRAFT_64674 I 0.000
BAUCODRAFT_197012 Baudoinia compniacensis BAUCODRAFT_197012 I 0.000
BBA_03269 Beauveria bassiana BBA_03269 N 0.000
COCC4DRAFT_160202 Bipolaris maydis COCC4DRAFT_160202 I 0.000
COCC4DRAFT_207933 Bipolaris maydis COCC4DRAFT_207933 I 0.000
COCC4DRAFT_47497 Bipolaris maydis COCC4DRAFT_47497 I 0.000
COCMIDRAFT_23407 Bipolaris oryzae COCMIDRAFT_23407 I 0.000
COCMIDRAFT_8258 Bipolaris oryzae COCMIDRAFT_8258 I 0.000
COCMIDRAFT_84872 Bipolaris oryzae COCMIDRAFT_84872 I 0.000
COCSADRAFT_150882 Bipolaris sorokiniana COCSADRAFT_150882 I 0.000
COCSADRAFT_174716 Bipolaris sorokiniana COCSADRAFT_174716 I 0.000
COCSADRAFT_243527 Bipolaris sorokiniana COCSADRAFT_243527 I 0.000
COCVIDRAFT_103972 Bipolaris victoriae COCVIDRAFT_103972 I 0.000
COCVIDRAFT_29056 Bipolaris victoriae COCVIDRAFT_29056 I 0.000
COCVIDRAFT_34294 Bipolaris victoriae COCVIDRAFT_34294 I 0.000
COCCADRAFT_3273 Bipolaris zeicola COCCADRAFT_3273 I 0.000
COCCADRAFT_34914 Bipolaris zeicola COCCADRAFT_34914 I 0.000
COCCADRAFT_94387 Bipolaris zeicola COCCADRAFT_94387 I 0.000
BDDG_02817 Blastomyces dermatitidis BDDG_02817 I 0.000
BGHDH14_bgh00681 Blumeria graminis BGHDH14_bgh00681 I 0.000
BGHDH14_bgh05670 Blumeria graminis BGHDH14_bgh05670 I 0.000
BGHDH14_bghG002046000001001 Blumeria graminis BGHDH14_bghG002046000001001 I 0.000
Bcin03g02160 Botrytis cinerea Bcin03g02160 I 0.000
Bcin10g03880 Botrytis cinerea Bcin10g03880 I 0.000
PVAR5_3046 Byssochlamys spectabilis PVAR5_3046 I 0.000
CAGL0G08844g Candida glabrata CAGL0G08844g I 0.000
PGUG_03208 Candida guilliermondii PGUG_03208 I 0.000
A1O1_01019 Capronia coronata A1O1_01019 I 0.000
A1O3_07535 Capronia epimyces A1O3_07535 I 0.000
A1O3_10373 Capronia epimyces A1O3_10373 I 0.000
PV04_02027 Capronia semiimmersa PV04_02027 I 0.000
Z519_03481 Cladophialophora bantiana Z519_03481 I 0.000
G647_00084 Cladophialophora carrionii G647_00084 I 0.000
PV07_10738 Cladophialophora immunda PV07_10738 I 0.000
A1O5_04202 Cladophialophora psammophila A1O5_04202 I 0.000
A1O7_00074 Cladophialophora yegresii A1O7_00074 I 0.000
CPUR_06386 Claviceps purpurea CPUR_06386 I 0.000
CIMG_03723 Coccidioides immitis CIMG_03723 I 0.000
CPC735_005650 Coccidioides posadasii CPC735_005650 I 0.000
estExt_Genewise1.C_350071 Cochliobolus heterostrophus C5 estExt_Genewise1.C_350071 I 0.000
estExt_Genewise1Plus.C_11405 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_11405 I 0.000
estExt_Genewise1Plus.C_11533 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_11533 I 0.000
CFIO01_13705 Colletotrichum fioriniae CFIO01_13705 I 0.000
CGGC5_1101 Colletotrichum gloeosporioides CGGC5_1101 I 0.000
GLRG_02281 Colletotrichum graminicola GLRG_02281 I 0.000
CH063_05582 Colletotrichum higginsianum CH063_05582 I 0.000
Cob_06492 Colletotrichum orbiculare Cob_06492 I 0.000
CSUB01_04391 Colletotrichum sublineola CSUB01_04391 I 0.000
W97_02588 Coniosporium apollinis W97_02588 I 0.000
estExt_Genewise1.C_11263 Cryphonectria parasitica estExt_Genewise1.C_11263 I 0.000
estExt_Genewise1Plus.C_12924 Cryphonectria parasitica estExt_Genewise1Plus.C_12924 I 0.000
HMPREF1541_07771 Cyphellophora europaea HMPREF1541_07771 I 0.000
H072_1723 Dactylellina haptotyla H072_1723 I 0.000
DOTSEDRAFT_68949 Dothistroma septosporum DOTSEDRAFT_68949 I 0.000
DRE_01382 Drechslerella stenobrocha DRE_01382 I 0.000
Ecym_5397 Eremothecium cymbalariae Ecym_5397 I 0.000
A1O9_05871 Exophiala aquamarina A1O9_05871 N 0.000
HMPREF1120_00700 Exophiala dermatitidis HMPREF1120_00700 I 0.000
PV10_09014 Exophiala mesophila PV10_09014 I 0.000
PV06_03636 Exophiala oligosperma PV06_03636 I 0.000
PV06_08134 Exophiala oligosperma PV06_08134 I 0.000
PV11_05223 Exophiala sideris PV11_05223 I 0.000
PV11_07819 Exophiala sideris PV11_07819 I 0.000
PV08_06047 Exophiala spinifera PV08_06047 I 0.000
PV08_06945 Exophiala spinifera PV08_06945 I 0.000
PV05_03147 Exophiala xenobiotica PV05_03147 I 0.000
PV05_10933 Exophiala xenobiotica PV05_10933 I 0.000
Z517_08868 Fonsecaea pedrosoi Z517_08868 I 0.000
FFUJ_03061 Fusarium fujikuroi FFUJ_03061 I 0.000
FFUJ_07921 Fusarium fujikuroi FFUJ_07921 I 0.000
FGRRES_02531 Fusarium graminearum FGRRES_02531 I 0.000
FGRRES_06810 Fusarium graminearum FGRRES_06810 I 0.000
FOXG_02014 Fusarium oxysporum FOXG_02014 I 0.000
FOXG_10560 Fusarium oxysporum FOXG_10560 I 0.000
FPSE_08652 Fusarium pseudograminearum FPSE_08652 I 0.000
FPSE_11855 Fusarium pseudograminearum FPSE_11855 I 0.000
NechaG70404 Fusarium solani NechaG70404 I 0.000
NechaG96223 Fusarium solani NechaG96223 I 0.000
FVEG_05176 Fusarium verticillioides FVEG_05176 I 0.000
FVEG_09208 Fusarium verticillioides FVEG_09208 I 0.000
HCBG_06695 Histoplasma capsulatum HCBG_06695 I 0.000
KAFR_0J01710 Kazachstania africana KAFR_0J01710 I 0.000
KNAG_0E01760 Kazachstania naganishii KNAG_0E01760 I 0.000
KLLA0_F04609g Kluyveromyces lactis KLLA0_F04609g I 0.000
KLTH0G09108g Kluyveromyces thermotolerans KLTH0G09108g I 0.000
Kwal_4754 Kluyveromyces waltii Kwal_4754 I 0.000
PAS_chr4_0203 Komagataella pastoris PAS_chr4_0203 I 0.000
KUCA_T00002124001 Kuraishia capsulata KUCA_T00002124001 I 0.000
SAKL0E08998g Lachancea kluyveri SAKL0E08998g I 0.000
LALA0_S04e08614g Lachancea lanzarotensis LALA0_S04e08614g I 0.000
KLTH0G09108g Lachancea thermotolerans KLTH0G09108g I 0.000
LEMA_P017080.1 Leptosphaeria maculans LEMA_P017080.1 I 0.000
LEMA_P018460.1 Leptosphaeria maculans LEMA_P018460.1 I 0.000
LEMA_P079800.1 Leptosphaeria maculans LEMA_P079800.1 I 0.000
MPH_05411 Macrophomina phaseolina MPH_05411 I 0.000
MPH_05518 Macrophomina phaseolina MPH_05518 I 0.000
MGG_05683 Magnaporthe oryzae MGG_05683 I 0.000
MGG_09118 Magnaporthe oryzae MGG_09118 N 0.000
MBM_01220 Marssonina brunnea MBM_01220 I 0.000
MBM_08201 Marssonina brunnea MBM_08201 I 0.000
MAC_04093 Metarhizium acridum MAC_04093 I 0.000
MBR_05424 Metarhizium brunneum MBR_05424 I 0.000
MGU_05483 Metarhizium guizhouense MGU_05483 N 0.000
MAJ_06390 Metarhizium majus MAJ_06390 I 0.000
X797_009558 Metarhizium robertsii X797_009558 I 0.000
PGUG_03208 Meyerozyma guilliermondii PGUG_03208 I 0.000
MCYG_01011 Microsporum canis MCYG_01011 I 0.000
MGYG_00975 Microsporum gypseum MGYG_00975 I 0.000
Moror_2492 Moniliophthora roreri Moror_2492 I 0.000
fgeneshMC_pg.2_#_284 Mucor circinelloides fgeneshMC_pg.2_#_284 I 0.000
MYCTH_2301134 Myceliophthora thermophila MYCTH_2301134 I 0.000
e_gw1.1.3784.1 Mycosphaerella fijiensis e_gw1.1.3784.1 I 0.000
estExt_Genewise1Plus.C_chr_11749 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_11749 I 0.000
NCAS_0B06550 Naumovozyma castellii NCAS_0B06550 I 0.000
NDAI_0B03850 Naumovozyma dairenensis NDAI_0B03850 I 0.000
estExt_Genewise1Plus.C_sca_20_chr6_4_00971 Nectria haematococca estExt_Genewise1Plus.C_sca_20_chr6_4_00971 I 0.000
fgenesh1_pm.sca_6_chr9_2_0000181 Nectria haematococca fgenesh1_pm.sca_6_chr9_2_0000181 I 0.000
UCRNP2_4088 Neofusicoccum parvum UCRNP2_4088 I 0.000
UCRNP2_488 Neofusicoccum parvum UCRNP2_488 I 0.000
NFIA_065310 Neosartorya fischeri CADNFIAG00006112 I 0.000
NCU00155 Neurospora crassa NCU00155 D 0.000
estExt_Genewise1Plus.C_51047 Neurospora discreta estExt_Genewise1Plus.C_51047 I 0.000
NEUTE1DRAFT_81814 Neurospora tetrasperma NEUTE1DRAFT_81814 I 0.000
OIDMADRAFT_105646 Oidiodendron maius OIDMADRAFT_105646 I 0.000
OIDMADRAFT_111796 Oidiodendron maius OIDMADRAFT_111796 I 0.000
OCS_01648 Ophiocordyceps sinensis OCS_01648 I 0.000
F503_04993 Ophiostoma piceae uamh F503_04993 I 0.000
PABG_02299 Paracoccidioides brasiliensis PABG_02299 I 0.000
Pc18g00400 Penicillium chrysogenum Pc18g00400 I 0.000
PDIP_27070 Penicillium digitatum PDIP_27070 I 0.000
PEX1_059620 Penicillium expansum PEX1_059620 I 0.000
PITC_065240 Penicillium italicum PITC_065240 I 0.000
PMAA_023940 Penicillium marneffei PMAA_023940 I 0.000
PDE_05166 Penicillium oxalicum PDE_05166 I 0.000
PCH_Pc18g00400 Penicillium rubens PCH_Pc18g00400 I 0.000
U727_00433850521 Penicillium solitum U727_00433850521 I 0.000
U727_0043393211 Penicillium solitum U727_0043393211 I 0.000
PFICI_10867 Pestalotiopsis fici PFICI_10867 I 0.000
PFICI_12992 Pestalotiopsis fici PFICI_12992 I 0.000
SNOG_10771 Phaeosphaeria nodorum SNOG_10771 I 0.000
SNOG_14662 Phaeosphaeria nodorum SNOG_14662 I 0.000
SNOG_14714 Phaeosphaeria nodorum SNOG_14714 I 0.000
XP_002493608.1 Pichia pastoris XP_002493608.1 I 0.000
PODANS_7_5860 Podospora anserina PODANS_7_5860 N 0.000
GMDG_00261 Pseudogymnoascus destructans GMDG_00261 I 0.000
GMDG_03842 Pseudogymnoascus destructans GMDG_03842 I 0.000
PTT_04846 Pyrenophora teres PTT_04846 I 0.000
PTT_11750 Pyrenophora teres PTT_11750 I 0.000
PTT_18497 Pyrenophora teres PTT_18497 I 0.000
PTRG_00141 Pyrenophora triticirepentis PTRG_00141 I 0.000
PTRG_09927 Pyrenophora triticirepentis PTRG_09927 I 0.000
Z518_02994 Rhinocladiella mackenziei Z518_02994 I 0.000
Z518_07968 Rhinocladiella mackenziei Z518_07968 I 0.000
SU7_1579 Saccharomyces arboricola SU7_1579 I 0.000
11848_Multiple Saccharomyces bayanus 11848_Multiple I 0.000
Scas_Contig662.8 Saccharomyces castellii Scas_Contig662.8 I 0.000
ASG1 Saccharomyces cerevisiae YIL130W D 0.000
10452_Multiple Saccharomyces mikatae 10452_Multiple I 0.000
10716_YIL130W Saccharomyces paradoxus 10716_YIL130W I 0.000
AACERI_AaceriAER370W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER370W I 0.000
SCHCODRAFT_108853 Schizophyllum commune SCHCODRAFT_108853 I 0.000
SBOR_6586 Sclerotinia borealis SBOR_6586 I 0.000
SETTUDRAFT_166989 Setosphaeria turcica SETTUDRAFT_166989 I 0.000
SETTUDRAFT_167119 Setosphaeria turcica SETTUDRAFT_167119 I 0.000
SETTUDRAFT_182790 Setosphaeria turcica SETTUDRAFT_182790 I 0.000
SEPMUDRAFT_122857 Sphaerulina musiva SEPMUDRAFT_122857 I 0.000
SPBR_02224 Sporothrix brasiliensis SPBR_02224 I 0.000
HMPREF1624_02869 Sporothrix schenckii HMPREF1624_02869 I 0.000
S40288_00263 Stachybotrys chartarum S40288_00263 I 0.000
S40288_02961 Stachybotrys chartarum S40288_02961 I 0.000
S40285_00491 Stachybotrys chlorohalonata S40285_00491 I 0.000
S40285_01567 Stachybotrys chlorohalonata S40285_01567 I 0.000
SNOG_10771 Stagonospora nodorum SNOG_10771 I 0.000
SNOG_14661 Stagonospora nodorum SNOG_14661 I 0.000
SNOG_14714 Stagonospora nodorum SNOG_14714 I 0.000
PMAA_023940 Talaromyces marneffei PMAA_023940 I 0.000
TSTA_032370 Talaromyces stipitatus TSTA_032370 I 0.000
TBLA_0G02610 Tetrapisispora blattae TBLA_0G02610 I 0.000
THITE_57956 Thielavia terrestris THITE_57956 I 0.000
UCRPA7_6910 Togninia minima UCRPA7_6910 I 0.000
VHEMI01078 Torrubiella hemipterigena VHEMI01078 I 0.000
VHEMI02852 Torrubiella hemipterigena VHEMI02852 I 0.000
TDEL_0C04480 Torulaspora delbrueckii TDEL_0C04480 I 0.000
TRIATDRAFT_145432 Trichoderma atroviride TRIATDRAFT_145432 I 0.000
TRIATDRAFT_295508 Trichoderma atroviride TRIATDRAFT_295508 I 0.000
TRIREDRAFT_2148 Trichoderma reesei TRIREDRAFT_2148 I 0.000
TRIREDRAFT_48281 Trichoderma reesei TRIREDRAFT_48281 I 0.000
TRIVIDRAFT_33603 Trichoderma virens TRIVIDRAFT_33603 I 0.000
TRIVIDRAFT_82975 Trichoderma virens TRIVIDRAFT_82975 I 0.000
TEQG_01038 Trichophyton equinum TEQG_01038 I 0.000
H101_06009 Trichophyton interdigitale H101_06009 I 0.000
H102_08256 Trichophyton rubrum H102_08256 I 0.000
H105_08284 Trichophyton soudanense H105_08284 I 0.000
TESG_04568 Trichophyton tonsurans TESG_04568 I 0.000
TRV_01300 Trichophyton verrucosum TRV_01300 N 0.000
GSTUM_00004065001 Tuber melanosporum GSTUM_00004065001 I 0.000
GSTUM_00005693001 Tuber melanosporum GSTUM_00005693001 I 0.000
UREG_07542 Uncinocarpus reesii UREG_07542 I 0.000
Kpol_1039p11 Vanderwaltozyma polyspora Kpol_1039p11 I 0.000
PV09_02833 Verruconis gallopava PV09_02833 I 0.000
PV09_07264 Verruconis gallopava PV09_07264 I 0.000
VDAG_03724 Verticillium dahliae VDAG_03724 I 0.000
BN7_630 Wickerhamomyces ciferrii BN7_630 I 0.000
YALI0_C22990g Yarrowia lipolytica YALI0_C22990g I 0.000
Mycgr3G66057 Zymoseptoria tritici Mycgr3G66057 I 0.000