Lus10032240.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10032240.g T334579_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.737 0.977
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.705
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.705
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10032240 Sox 156 199

Links

Other Sox family TFs
Other Linum usitatissimum TFs

535 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG007267.1 Alligator sinensis Alligator_sinensis_CCG007267.1 N
Alligator_sinensis_CCG018102.1 Alligator sinensis Alligator_sinensis_CCG018102.1 N
ZFHX4 Callithrix jacchus ENSCJAG00000000517 I
Cmyd_10008320 Chelonia mydas Cmyd_10008320 N
Cmyd_10016926 Chelonia mydas Cmyd_10016926 N
ENSSTOG00000024916 Ictidomys tridecemlineatus ENSSTOG00000024916 N
ENSLACG00000009923 Latimeria chalumnae ENSLACG00000009923 N
ENSMGAG00000015846 Meleagris gallopavo ENSMGAG00000015846 N
Myotis_brandtii_ZFHX3_10022432 Myotis brandtii Myotis_brandtii_ZFHX3_10022432 N
Ogr16852 Ophisaurus gracilis Ogr16852 N
ENSPSIG00000009809 Pelodiscus sinensis ENSPSIG00000009809 N