MDP0000268093 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000268093 T334607_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.460 0.614
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.460 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000268093 Sox 177 243
MDP0000268093 Sox 293 359
MDP0000268093 Sox 421 501

Links

Other Sox family TFs
Other Malus domestica TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G26960 Brachypodium distachyon BRADI1G26960 N 0.000
MLOC_56322 Hordeum vulgare MLOC_56322 N 0.000
OB07G21030 Oryza brachyantha OB07G21030 N 0.000
ORGLA07G0123700 Oryza glaberrima ORGLA07G0123700 N 0.000
BGIOSGA025749 Oryza indica BGIOSGA025749 N 0.000
OLONG_010535 Oryza longistaminata OLONG_010535 N 0.000
Pavir.Ba00916 Panicum virgatum Pavir.Ba00916 N 0.000
Pavir.J19858 Panicum virgatum Pavir.J19858 N 0.000
Si028955m.g Setaria italica Si028955m.g N 0.000
Sb06g031160 Sorghum bicolor Sb06g031160 N 0.000
Traes_7AL_635989DBF Triticum aestivum Traes_7AL_635989DBF N 0.000
Traes_7BL_C12DC1916 Triticum aestivum Traes_7BL_C12DC1916 N 0.000
Traes_7DL_9D97AB442 Triticum aestivum Traes_7DL_9D97AB442 N 0.000
TRIUR3_11036 Triticum urartu TRIUR3_11036 N 0.000
GRMZM2G104268 Zea mays GRMZM2G104268 N 0.000