Pavir.Ba00601 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ba00601 T334659_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.673
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.567 0.653
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.567 0.633
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.567 0.633
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.532 0.551
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.532 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00601.1.p Sox 117 165

Links

Other Sox family TFs
Other Panicum virgatum TFs

494 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g03640 Acanthocheilonema viteae nAv.1.0.1.g03640 N 0.000
AAEL003558 Aedes aegypti AAEL003558 N 0.000
ANCCAN_02501 Ancylostoma caninum ANCCAN_02501 N 0.000
ANCCEY_04498 Ancylostoma ceylanicum ANCCEY_04498 N 0.000
ANCDUO_01800 Ancylostoma duodenale ANCDUO_01800 N 0.000
ASIM_0001023101 Anisakis simplex ASIM_0001023101 N 0.000
AARA001118 Anopheles arabiensis AARA001118 N 0.000
AATE005200 Anopheles atroparvus AATE005200 N 0.000
ACOM027781 Anopheles coluzzii ACOM027781 N 0.000
AMAM012119 Anopheles maculatus AMAM012119 N 0.000
AMEC001472 Anopheles melas AMEC001472 N 0.000
AMEM006409 Anopheles merus AMEM006409 N 0.000
AQUA008305 Anopheles quadriannulatus AQUA008305 N 0.000
ALUE_0000523001 Ascaris lumbricoides ALUE_0000523001 N 0.000
BGLB003107 Biomphalaria glabrata BGLB003107 N 0.000
Bm12962 Brugia malayi Bm12962 N 0.000
BTMF_0000819101 Brugia timori BTMF_0000819101 N 0.000
BXY_0681200 Bursaphelenchus xylophilus BXY_0681200 N 0.000
CBN28537 Caenorhabditis brenneri CBN28537 N 0.000
CBN28364 Caenorhabditis brenneri CBN28364 N 0.000
CBG25174 Caenorhabditis briggsae CBG25174 N 0.000
CJA40030 Caenorhabditis japonica CJA40030 N 0.000
CJA30884 Caenorhabditis japonica CJA30884 N 0.000
CapteG215623 Capitella teleta CapteG215623 N 0.000
CGI_10012805 Crassostrea gigas CGI_10012805 N 0.000
CpipJ_CPIJ006385 Culex pipiens CpipJ_CPIJ006385 N 0.000
CpipJ_CPIJ018552 Culex pipiens CpipJ_CPIJ018552 N 0.000
CPIJ018552 Culex quinquefasciatus CPIJ018552 N 0.000
CPIJ006385 Culex quinquefasciatus CPIJ006385 N 0.000
CGOC_0000560601 Cylicostephanus goldi CGOC_0000560601 N 0.000
DICVIV_09521 Dictyocaulus viviparus DICVIV_09521 N 0.000
nDi.2.2.2.g01975 Dirofilaria immitis nDi.2.2.2.g01975 N 0.000
GM26798 Drosophila sechellia FBgn0181651 N 0.000
EEL_0000436501 Elaeophora elaphi EEL_0000436501 N 0.000
HPLM_0001120601 Haemonchus placei HPLM_0001120601 N 0.000
HPBE_0001925501 Heligmosomoides bakeri HPBE_0001925501 N 0.000
HelroG184094 Helobdella robusta HelroG184094 N 0.000
Hba_16068 Heterorhabditis bacteriophora Hba_16068 N 0.000
nLs.2.1.2.g02280 Litomosoides sigmodontis nLs.2.1.2.g02280 N 0.000
LOAG_18302 Loa loa LOAG_18302 N 0.000
LCUP009926 Lucilia cuprina LCUP009926 N 0.000
MESCA003372 Megaselia scalaris MESCA003372 N 0.000
augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0 N 0.000
MDOA007303 Musca domestica MDOA007303 N 0.000
OFLC_0001322801 Onchocerca flexuosa OFLC_0001322801 N 0.000
nOo.2.0.1.g07994 Onchocerca ochengi nOo.2.0.1.g07994 N 0.000
nOo.2.0.1.g06917 Onchocerca ochengi nOo.2.0.1.g06917 N 0.000
WBGene00237282 Onchocerca volvulus WBGene00237282 N 0.000
PEQ_0000886501 Parascaris equorum PEQ_0000886501 N 0.000
scaffold58-EXSNAP2012.11 Pristionchus exspectatus scaffold58-EXSNAP2012.11 N 0.000
PPA09748 Pristionchus pacificus PPA09748 N 0.000
RPRC014602 Rhodnius prolixus RPRC014602 N 0.000
L893_g14196 Steinernema glaseri L893_g14196 N 0.000
L898_g11712 Steinernema monticolum L898_g11712 N 0.000
SVE_1689300 Strongyloides venezuelensis SVE_1689300 N 0.000
TELCIR_13776 Teladorsagia circumcincta TELCIR_13776 N 0.000
TCLT_0000816701 Thelazia callipaeda TCLT_0000816701 N 0.000
TCNE_0000027001 Toxocara canis TCNE_0000027001 N 0.000
EFV52452 Trichinella spiralis EFV52452 N 0.000
D918_05751 Trichuris suis D918_05751 N 0.000
TTRE_0000249801 Trichuris trichiura TTRE_0000249801 N 0.000
WUBG_04923 Wuchereria bancrofti WUBG_04923 N 0.000