Pavir.J07596 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J07596 T334683_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.464 0.629
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.464 0.629
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07596.1.p Sox 163 228
Pavir.J07596.1.p Sox 285 351
Pavir.J07596.1.p Sox 410 478

Links

Other Sox family TFs
Other Panicum virgatum TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_42487 Aegilops tauschii F775_42487 N 0.000
AMTR_s00004p00067720 Amborella trichopoda AMTR_s00004p00067720 N 0.000
BRADI1G13207 Brachypodium distachyon BRADI1G13207 N 0.000
Ciclev10017173m.g Citrus clementina Ciclev10017173m.g N 0.000
orange1.1g032690m.g Citrus sinensis orange1.1g032690m.g N 0.000
Eucgr.J01756 Eucalyptus grandis Eucgr.J01756 N 0.000
gene01596-v1.0-hybrid Fragaria vesca gene01596-v1.0-hybrid N 0.000
MLOC_16746 Hordeum vulgare MLOC_16746 N 0.000
MLOC_19031 Hordeum vulgare MLOC_19031 I 0.000
LPERR03G23380 Leersia perrieri LPERR03G23380 N 0.000
MDP0000263900 Malus domestica MDP0000263900 I 0.000
cassava10020.m1 Manihot esculenta cassava10020.m1 N 0.000
GSMUA_Achr3G30880_001 Musa acuminata GSMUA_Achr3G30880_001 N 0.000
OBART03G28190 Oryza barthii OBART03G28190 N 0.000
OB03G35830 Oryza brachyantha OB03G35830 N 0.000
ORGLA03G0260500 Oryza glaberrima ORGLA03G0260500 N 0.000
OGLUM03G28820 Oryza glumaepatula OGLUM03G28820 N 0.000
BGIOSGA010118 Oryza indica BGIOSGA010118 N 0.000
OMERI03G24810 Oryza meridionalis OMERI03G24810 N 0.000
ONIVA03G29220 Oryza nivara ONIVA03G29220 N 0.000
OPUNC03G25700 Oryza punctata OPUNC03G25700 N 0.000
ORUFI03G29320 Oryza rufipogon ORUFI03G29320 N 0.000
OS03G0657400 Oryza sativa OS03G0657400 N 0.000
Pavir.J22786 Panicum virgatum Pavir.J22786 N 0.000
POPTR_0003s20860 Populus trichocarpa POPTR_0003s20860 N 0.000
POPTR_0001s03970 Populus trichocarpa POPTR_0001s03970 N 0.000
SapurV1A.0081s0610 Salix purpurea SapurV1A.0081s0610 N 0.000
Si038001m.g Setaria italica Si038001m.g N 0.000
Sb01g012870 Sorghum bicolor Sb01g012870 N 0.000
Traes_3AL_3160E1F30 Triticum aestivum Traes_3AL_3160E1F30 I 0.000
TRAES3BF090100100CFD_g Triticum aestivum TRAES3BF090100100CFD_g I 0.000
Traes_4AL_234E1CDF6 Triticum aestivum Traes_4AL_234E1CDF6 N 0.000
Traes_4DS_CFC487CE5 Triticum aestivum Traes_4DS_CFC487CE5 N 0.000
TRIUR3_34281 Triticum urartu TRIUR3_34281 I 0.000
GRMZM2G161411 Zea mays GRMZM2G161411 N 0.000
GRMZM2G149219 Zea mays GRMZM2G149219 N 0.000