Thhalv10019126m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10019126m.g T334737_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.741 1.000
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.741 1.000
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.660 0.689
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.630 0.644
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.630 0.644
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.560 0.578
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019126m Sox 149 193

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004806 Ailuropoda melanoleuca ENSAMEG00000004806 N
ENSBTAP00000001247-D1 Bos grunniens ENSBTAP00000001247-D1 N
ENSBTAG00000000943 Bos taurus ENSBTAG00000000943 N
ENSCJAG00000004366 Callithrix jacchus ENSCJAG00000004366 N
ENSCAFG00000031764 Canis familiaris ENSCAFG00000031764 N
ENSCPOG00000012429 Cavia porcellus ENSCPOG00000012429 N
ENSCSAG00000008839 Chlorocebus sabaeus ENSCSAG00000008839 N
ENSDNOG00000047188 Dasypus novemcinctus ENSDNOG00000047188 N
ENSDORG00000003193 Dipodomys ordii ENSDORG00000003193 N
ENSETEG00000005043 Echinops telfairi ENSETEG00000005043 N
ENSECAG00000002943 Equus caballus ENSECAG00000002943 N
ENSFCAG00000029151 Felis catus ENSFCAG00000029151 N
ZNF286A Homo sapiens ENSG00000187607 N
ENSSTOG00000024669 Ictidomys tridecemlineatus ENSSTOG00000024669 N
ENSLAFG00000016102 Loxodonta africana ENSLAFG00000016102 N
ENSMMUP00000003150 Macaca fascicularis ENSMMUP00000003150 N
ENSMMUG00000002354 Macaca mulatta ENSMMUG00000002354 N
ENSMPUG00000010104 Mustela putorius furo ENSMPUG00000010104 N
Zfp286 Mus musculus ENSMUSG00000047342 N
ENSMLUG00000015932 Myotis lucifugus ENSMLUG00000015932 N
ENSNLEG00000014652 Nomascus leucogenys ENSNLEG00000014652 N
ENSOPRG00000013892 Ochotona princeps ENSOPRG00000013892 N
ENSOCUG00000024037 Oryctolagus cuniculus ENSOCUG00000024037 N
ENSOGAG00000005719 Otolemur garnettii ENSOGAG00000005719 N
ENSOARG00000016792 Ovis aries ENSOARG00000016792 N
ZNF286A Pan troglodytes ENSPTRG00000008803 N
ENSPANG00000023728 Papio anubis ENSPANG00000023728 N
ENSPPYG00000029913 Pongo abelii ENSPPYG00000029913 N
ENSPVAG00000015636 Pteropus vampyrus ENSPVAG00000015636 N
Zfp286a Rattus norvegicus ENSRNOG00000003218 N
ENSSSCG00000018029 Sus scrofa ENSSSCG00000018029 N
ENSTSYG00000002897 Tarsius syrichta ENSTSYG00000002897 N
ENSTTRG00000017194 Tursiops truncatus ENSTTRG00000017194 N
ENSVPAG00000012293 Vicugna pacos ENSVPAG00000012293 N