16668_YMR072W (Saccharomyces mikatae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 16668_YMR072W T335139_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF2
M00069_2.00 		Saccharomyces cerevisiae
NNCTCTAGASN
NSTCTAGAGNN		 PBM
Badis et al.(2008)
ABF2_2116 		0.638 0.853
ABF2
M07497_2.00 		Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0266.1 		0.638 0.853
ABF2
M08605_2.00 		Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 Misc
DeBoer et al.(2011)
YMR072W_541 		0.638 0.853
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16668_YMR072W Sox 43 111
16668_YMR072W Sox 116 182

Links

Other Sox family TFs
Other Saccharomyces mikatae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action