17027_YMR072W (Saccharomyces paradoxus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 17027_YMR072W T335140_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF2
M00069_2.00 		Saccharomyces cerevisiae
NNCTCTAGASN
NSTCTAGAGNN		 PBM
Badis et al.(2008)
ABF2_2116 		0.710 0.956
ABF2
M07497_2.00 		Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0266.1 		0.710 0.956
ABF2
M08605_2.00 		Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 Misc
DeBoer et al.(2011)
YMR072W_541 		0.710 0.956
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
17027_YMR072W Sox 85 153
17027_YMR072W Sox 158 224

Links

Other Sox family TFs
Other Saccharomyces paradoxus TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB03089.1 Alternaria brassicicola AB03089.1 N
COCMIDRAFT_109350 Bipolaris oryzae COCMIDRAFT_109350 N
COCSADRAFT_40698 Bipolaris sorokiniana COCSADRAFT_40698 N
COCVIDRAFT_30775 Bipolaris victoriae COCVIDRAFT_30775 N
COCCADRAFT_111784 Bipolaris zeicola COCCADRAFT_111784 N
estExt_Genewise1Plus.C_280027 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_280027 N
LEMA_P090080.1 Leptosphaeria maculans LEMA_P090080.1 N
SNOG_14204 Phaeosphaeria nodorum SNOG_14204 N
PTT_17861 Pyrenophora teres PTT_17861 N
PTRG_04801 Pyrenophora triticirepentis PTRG_04801 N
SETTUDRAFT_162028 Setosphaeria turcica SETTUDRAFT_162028 N
SNOG_14204 Stagonospora nodorum SNOG_14204 N