HCOI01912600 (Haemonchus contortus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 HCOI01912600 T336405_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.422 0.362
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HCOI01912600.t1 Sox 23 91

Links

Other Sox family TFs
Other Haemonchus contortus TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_07224 Aegilops tauschii F775_07224 I
F775_08057 Aegilops tauschii F775_08057 I
BRADI1G52187 Brachypodium distachyon BRADI1G52187 I
BRADI3G50067 Brachypodium distachyon BRADI3G50067 I
Gorai.003G169000 Gossypium raimondii Gorai.003G169000 I
MLOC_56103 Hordeum vulgare MLOC_56103 I
MLOC_53086 Hordeum vulgare MLOC_53086 I
MLOC_15746 Hordeum vulgare MLOC_15746 I
LPERR02G21010 Leersia perrieri LPERR02G21010 I
LPERR04G16200 Leersia perrieri LPERR04G16200 I
GSMUA_Achr11G17510_001 Musa acuminata GSMUA_Achr11G17510_001 I
GSMUA_Achr8G11590_001 Musa acuminata GSMUA_Achr8G11590_001 I
OBART04G20020 Oryza barthii OBART04G20020 I
OBART02G25700 Oryza barthii OBART02G25700 I
OB02G33070 Oryza brachyantha OB02G33070 I
OB04G27030 Oryza brachyantha OB04G27030 I
ORGLA04G0171200 Oryza glaberrima ORGLA04G0171200 I
OGLUM02G26220 Oryza glumaepatula OGLUM02G26220 I
OGLUM04G19900 Oryza glumaepatula OGLUM04G19900 I
BGIOSGA014649 Oryza indica BGIOSGA014649 I
BGIOSGA005950 Oryza indica BGIOSGA005950 I
OLONG_005741 Oryza longistaminata OLONG_005741 N
OLONG_018618 Oryza longistaminata OLONG_018618 I
OMERI02G25220 Oryza meridionalis OMERI02G25220 I
OMERI03G30800 Oryza meridionalis OMERI03G30800 I
ONIVA02G28150 Oryza nivara ONIVA02G28150 I
ONIVA04G18230 Oryza nivara ONIVA04G18230 I
OPUNC04G17680 Oryza punctata OPUNC04G17680 I
OPUNC02G23550 Oryza punctata OPUNC02G23550 I
ORUFI02G27110 Oryza rufipogon ORUFI02G27110 I
ORUFI04G21580 Oryza rufipogon ORUFI04G21580 I
OS02G0643600 Oryza sativa OS02G0643600 I
OS04G0536500 Oryza sativa OS04G0536500 I
Pavir.J39804 Panicum virgatum Pavir.J39804 I
Pavir.J09314 Panicum virgatum Pavir.J09314 N
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I
Pavir.J07126 Panicum virgatum Pavir.J07126 I
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I
Si010504m.g Setaria italica Si010504m.g I
Si017679m.g Setaria italica Si017679m.g I
Solyc08g079120.1 Solanum lycopersicum Solyc08g079120.1 I
Sb06g023780 Sorghum bicolor Sb06g023780 I
Sb04g033570 Sorghum bicolor Sb04g033570 I
Traes_2BL_24E6E8DF9 Triticum aestivum Traes_2BL_24E6E8DF9 I
Traes_7DS_7F0AF83B0 Triticum aestivum Traes_7DS_7F0AF83B0 I
Traes_7AS_6398221B7 Triticum aestivum Traes_7AS_6398221B7 I
Traes_6DL_D0BE06357 Triticum aestivum Traes_6DL_D0BE06357 I
Traes_6BL_8F77BF933 Triticum aestivum Traes_6BL_8F77BF933 I
Traes_6AL_BB7207AD1 Triticum aestivum Traes_6AL_BB7207AD1 I
Traes_4AL_F853C8660 Triticum aestivum Traes_4AL_F853C8660 I
Traes_2DL_343FA6101 Triticum aestivum Traes_2DL_343FA6101 I
Traes_2AL_82C3E7E14 Triticum aestivum Traes_2AL_82C3E7E14 I
TRIUR3_08851 Triticum urartu TRIUR3_08851 I
TRIUR3_20707 Triticum urartu TRIUR3_20707 I
GRMZM2G178998 Zea mays GRMZM2G178998 I
GRMZM2G315140 Zea mays GRMZM2G315140 I
GRMZM2G354151 Zea mays GRMZM2G354151 I