CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

L893_g31385 *(Steinernema glaseri)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00505 (HMG_box)	IPR000910	L893_g31385	T336563_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Tcf7 M00193_2.00	Mus musculus	HNHNNNNNN	NNNNNNDND	PBM Badis et al.(2009) Tcf7_0950	0.426	0.449
Tcf7l2 M00198_2.00	Mus musculus	NSWTCAAAVN	NBTTTGAWSN	PBM Badis et al.(2009) Tcf7l2_3461	0.426	0.449
Tcf7 M03532_2.00	Mus musculus	AAASATCAAAGV	BCTTTGATSTTT	SELEX Jolma et al.(2013) Tcf7_1	0.426	0.449
TCF7 M05755_2.00	Homo sapiens	DSATCAAWS	SWTTGATSH	SELEX Yin et al.(2017) TCF7_eDBD_HT-SELEX_1	0.426	0.449
TCF7 M05756_2.00	Homo sapiens	WCWKCGYCYCGWTGW	WCAWCGRGRCGMWGW	SELEX Yin et al.(2017) TCF7_eDBD_HT-SELEX_2	0.426	0.449
TCF7 M05890_2.00	Homo sapiens	NNASATCAAASNN	NNSTTTGATSTNN	SMiLE-seq Isakova et al.(2017) TCF7	0.426	0.449
Tcf7l2 M02646_2.00	Mus musculus	SATCAAAGN	NCTTTGATS	SELEX Hallikas et al.(2006) Tcf4	0.426	0.449
TCF7L2 M08167_2.00	Homo sapiens	NVASWTCAAAGVVN	NBBCTTTGAWSTBN	ChIP-seq Mathelier et al.(2014) MA0523.1	0.426	0.449
TCF7L2 M09393_2.00	Homo sapiens	DGCAGSTGKS	SMCASCTGCH	Misc Kulakovskiy et al.(2013) ITF2_HUMAN.H11MO.0.C	0.426	0.449
TCF7 M09386_2.00	Homo sapiens	NBBCTTTSAWSTBNBN	NVNVASWTSAAAGVVN	Misc Kulakovskiy et al.(2013) TCF7_HUMAN.H11MO.0.A	0.426	0.449
TCF7L2 M09394_2.00	Homo sapiens	VVASWTCAAAGVV	BBCTTTGAWSTBB	Misc Kulakovskiy et al.(2013) TF7L2_HUMAN.H11MO.0.A	0.426	0.449
Tcf7 M09400_2.00	Mus musculus	VVRVADSAAARVVVNV	BNBBBYTTTSHTBYBB	Misc Kulakovskiy et al.(2013) TCF7_MOUSE.H11MO.0.A	0.426	0.449
Tcf7l2 M09401_2.00	Mus musculus	VVASWTCAAAGVV	BBCTTTGAWSTBB	Misc Kulakovskiy et al.(2013) TF7L2_MOUSE.H11MO.0.A	0.426	0.449
TCF7L2 M09638_2.00	Homo sapiens	CCTTTGAWST	ASWTCAAAGG	Misc Heinz et al.(2010) K562-TCF7L2_GSE29196	0.426	0.449
TCF7 M11294_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF1_Q5_01	0.426	0.449
TCF7 M11295_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF1_Q5	0.426	0.449
TCF7L2 M11316_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF4_Q5_01	0.426	0.449
TCF7L2 M11317_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF4_Q5_02	0.426	0.449
TCF7L2 M11318_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF4_Q5	0.426	0.449
TCF7L2 M11319_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF7L2_06	0.426	0.449
TCF7 M05757_2.00	Homo sapiens	RSATCAAAS	STTTGATSY	SELEX Yin et al.(2017) TCF7_eDBD_Methyl-HT-SELEX_1	0.426	0.449
TCF7 M05758_2.00	Homo sapiens	WCAWCGRGRCGMWGW	WCWKCGYCYCGWTGW	SELEX Yin et al.(2017) TCF7_eDBD_Methyl-HT-SELEX_2	0.426	0.449
Lef1 M00200_2.00	Mus musculus	NSWTCAAAVN	NBTTTGAWSN	PBM Badis et al.(2009) Lef1_3504	0.426	0.435
LEF1 M03511_2.00	Homo sapiens	NRAGATCAAAGRVWW	WWBYCTTTGATCTYN	SELEX Jolma et al.(2013) LEF1_1	0.426	0.435
LEF1 M05771_2.00	Homo sapiens	NSATCAAAS	STTTGATSN	SELEX Yin et al.(2017) LEF1_eDBD_HT-SELEX_1	0.426	0.435
LEF1 M05772_2.00	Homo sapiens	WCATCGRGRCGCTGW	WCAGCGYCYCGATGW	SELEX Yin et al.(2017) LEF1_eDBD_HT-SELEX_2	0.426	0.435
LEF1 M05775_2.00	Homo sapiens	ASATCAAAG	CTTTGATST	SELEX Yin et al.(2017) LEF1_FL_HT-SELEX_1	0.426	0.435
LEF1 M05776_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) LEF1_FL_HT-SELEX_2	0.426	0.435
LEF1 M05895_2.00	Homo sapiens	WTCAAAGNNN	NNNCTTTGAW	SMiLE-seq Isakova et al.(2017) LEF1	0.426	0.435
pan M06451_2.00	Drosophila melanogaster	DWYCAAAD	HTTTGRWH	B1H Zhu et al.(2011) pan_FlyReg_FBgn0085432	0.426	0.435
pan M08428_2.00	Drosophila melanogaster	WHNAAAVRNRSCGM	KCGSYNYBTTTNDW	ChIP-chip Mathelier et al.(2014) MA0237.2	0.426	0.435
LEF1 M09392_2.00	Homo sapiens	BSYTTTSWNNTBYH	DRVANNWSAAARSV	Misc Kulakovskiy et al.(2013) LEF1_HUMAN.H11MO.0.A	0.426	0.435
Lef1 M09402_2.00	Mus musculus	BSYTTTSWNNTBYH	DRVANNWSAAARSV	Misc Kulakovskiy et al.(2013) LEF1_MOUSE.H11MO.0.B	0.426	0.435
pan M11337_2.00	Drosophila melanogaster	AAGATCAAAGG	CCTTTGATCTT	Transfac Matys et al.(2006) I$TCF_1	0.426	0.435
pan M11338_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$TCF_Q6	0.426	0.435
LEF1 M11311_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q2_01	0.426	0.435
LEF1 M11312_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q3	0.426	0.435
LEF1 M11313_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q4	0.426	0.435
LEF1 M11314_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q5_01	0.426	0.435
LEF1 M11315_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q5	0.426	0.435
LEF1 M05773_2.00	Homo sapiens	ASATCAAAG	CTTTGATST	SELEX Yin et al.(2017) LEF1_eDBD_Methyl-HT-SELEX_1	0.426	0.435
LEF1 M05774_2.00	Homo sapiens	WCATCGRGGCGCTGW	WCAGCGCCYCGATGW	SELEX Yin et al.(2017) LEF1_eDBD_Methyl-HT-SELEX_2	0.426	0.435
LEF1 M05777_2.00	Homo sapiens	ASATCAAAG	CTTTGATST	SELEX Yin et al.(2017) LEF1_FL_Methyl-HT-SELEX_1	0.426	0.435
LEF1 M05778_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) LEF1_FL_Methyl-HT-SELEX_2	0.426	0.435
Tcf7l1 M00207_2.00	Mus musculus	NNNNWWDN	NHWWNNNN	PBM Badis et al.(2009) Tcf3_3787	0.425	0.435
TCF7L1 M03512_2.00	Homo sapiens	AAAGATCAAAGG	CCTTTGATCTTT	SELEX Jolma et al.(2013) TCF7L1_1	0.425	0.435
TCF7L1 M05779_2.00	Homo sapiens	RSATCAAAG	CTTTGATSY	SELEX Yin et al.(2017) TCF7L1_eDBD_HT-SELEX_1	0.425	0.435
TCF7L1 M05780_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) TCF7L1_eDBD_HT-SELEX_2	0.425	0.435
TCF7L1 M09395_2.00	Homo sapiens	NBBCTTTGAWSTB	VASWTCAAAGVVN	Misc Kulakovskiy et al.(2013) TF7L1_HUMAN.H11MO.0.B	0.425	0.435
Tcf7l1 M09406_2.00	Mus musculus	BBCTTTGAWST	ASWTCAAAGVV	Misc Kulakovskiy et al.(2013) TF7L1_MOUSE.H11MO.0.A	0.425	0.435
Tcf7l1 M09407_2.00	Mus musculus	NDGCAGSTGBB	VVCASCTGCHN	Misc Kulakovskiy et al.(2013) TFE2_MOUSE.H11MO.0.A	0.425	0.435
TCF7L1 M11320_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF3_01	0.425	0.435
TCF7L1 M11321_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF3_Q6_01	0.425	0.435
TCF7L1 M11322_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF3_Q6	0.425	0.435
TCF7L1 M05781_2.00	Homo sapiens	CTTTGATSY	RSATCAAAG	SELEX Yin et al.(2017) TCF7L1_eDBD_Methyl-HT-SELEX_1	0.425	0.435
TCF7L1 M05782_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) TCF7L1_eDBD_Methyl-HT-SELEX_2	0.425	0.435
pop-1 M00712_2.00	Caenorhabditis elegans	NNHDWVNNNN	NNNNBWHDNN	PBM Narasimhan et al.(2015) pTH9135	0.419	0.522
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
L893_g31385.t1	Sox	60	131	IKKPLNSFMLYMKCNRKKMLDENAEYRKMQSAELNKVMGENWQKLTPEERNVYEEMAKKEQENHKAKSPNWT

Links
Other Sox family TFs
Other *Steinernema glaseri* TFs

382 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ALUE_0001651801	Ascaris lumbricoides	ALUE_0001651801	N
TCNE_0000692801	Toxocara canis	TCNE_0000692801	N

L893_g31385 (Steinernema glaseri) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

382 Related TFs

L893_g31385 **(Steinernema glaseri)
Sox**