CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MCOS_0000930001 *(Mesocestoides corti)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00505 (HMG_box)	IPR000910	MCOS_0000930001	T336612_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Tcf7l1 M00207_2.00	Mus musculus	NNNNWWDN	NHWWNNNN	PBM Badis et al.(2009) Tcf3_3787	0.660	0.812
TCF7L1 M03512_2.00	Homo sapiens	AAAGATCAAAGG	CCTTTGATCTTT	SELEX Jolma et al.(2013) TCF7L1_1	0.660	0.812
TCF7L1 M05779_2.00	Homo sapiens	RSATCAAAG	CTTTGATSY	SELEX Yin et al.(2017) TCF7L1_eDBD_HT-SELEX_1	0.660	0.812
TCF7L1 M05780_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) TCF7L1_eDBD_HT-SELEX_2	0.660	0.812
TCF7L1 M09395_2.00	Homo sapiens	NBBCTTTGAWSTB	VASWTCAAAGVVN	Misc Kulakovskiy et al.(2013) TF7L1_HUMAN.H11MO.0.B	0.660	0.812
Tcf7l1 M09406_2.00	Mus musculus	BBCTTTGAWST	ASWTCAAAGVV	Misc Kulakovskiy et al.(2013) TF7L1_MOUSE.H11MO.0.A	0.660	0.812
Tcf7l1 M09407_2.00	Mus musculus	NDGCAGSTGBB	VVCASCTGCHN	Misc Kulakovskiy et al.(2013) TFE2_MOUSE.H11MO.0.A	0.660	0.812
TCF7L1 M11320_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF3_01	0.660	0.812
TCF7L1 M11321_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF3_Q6_01	0.660	0.812
TCF7L1 M11322_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF3_Q6	0.660	0.812
TCF7L1 M05781_2.00	Homo sapiens	CTTTGATSY	RSATCAAAG	SELEX Yin et al.(2017) TCF7L1_eDBD_Methyl-HT-SELEX_1	0.660	0.812
TCF7L1 M05782_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) TCF7L1_eDBD_Methyl-HT-SELEX_2	0.660	0.812
Tcf7l2 M00198_2.00	Mus musculus	NSWTCAAAVN	NBTTTGAWSN	PBM Badis et al.(2009) Tcf7l2_3461	0.659	0.812
Tcf7l2 M02646_2.00	Mus musculus	SATCAAAGN	NCTTTGATS	SELEX Hallikas et al.(2006) Tcf4	0.659	0.812
TCF7L2 M08167_2.00	Homo sapiens	NVASWTCAAAGVVN	NBBCTTTGAWSTBN	ChIP-seq Mathelier et al.(2014) MA0523.1	0.659	0.812
TCF7L2 M09393_2.00	Homo sapiens	DGCAGSTGKS	SMCASCTGCH	Misc Kulakovskiy et al.(2013) ITF2_HUMAN.H11MO.0.C	0.659	0.812
TCF7L2 M09394_2.00	Homo sapiens	VVASWTCAAAGVV	BBCTTTGAWSTBB	Misc Kulakovskiy et al.(2013) TF7L2_HUMAN.H11MO.0.A	0.659	0.812
Tcf7l2 M09401_2.00	Mus musculus	VVASWTCAAAGVV	BBCTTTGAWSTBB	Misc Kulakovskiy et al.(2013) TF7L2_MOUSE.H11MO.0.A	0.659	0.812
TCF7L2 M09638_2.00	Homo sapiens	CCTTTGAWST	ASWTCAAAGG	Misc Heinz et al.(2010) K562-TCF7L2_GSE29196	0.659	0.812
TCF7L2 M11316_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF4_Q5_01	0.659	0.812
TCF7L2 M11317_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF4_Q5_02	0.659	0.812
TCF7L2 M11318_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF4_Q5	0.659	0.812
TCF7L2 M11319_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF7L2_06	0.659	0.812
Lef1 M00200_2.00	Mus musculus	NSWTCAAAVN	NBTTTGAWSN	PBM Badis et al.(2009) Lef1_3504	0.659	0.797
LEF1 M03511_2.00	Homo sapiens	NRAGATCAAAGRVWW	WWBYCTTTGATCTYN	SELEX Jolma et al.(2013) LEF1_1	0.659	0.797
LEF1 M05771_2.00	Homo sapiens	NSATCAAAS	STTTGATSN	SELEX Yin et al.(2017) LEF1_eDBD_HT-SELEX_1	0.659	0.797
LEF1 M05772_2.00	Homo sapiens	WCATCGRGRCGCTGW	WCAGCGYCYCGATGW	SELEX Yin et al.(2017) LEF1_eDBD_HT-SELEX_2	0.659	0.797
LEF1 M05775_2.00	Homo sapiens	ASATCAAAG	CTTTGATST	SELEX Yin et al.(2017) LEF1_FL_HT-SELEX_1	0.659	0.797
LEF1 M05776_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) LEF1_FL_HT-SELEX_2	0.659	0.797
LEF1 M05895_2.00	Homo sapiens	WTCAAAGNNN	NNNCTTTGAW	SMiLE-seq Isakova et al.(2017) LEF1	0.659	0.797
LEF1 M09392_2.00	Homo sapiens	BSYTTTSWNNTBYH	DRVANNWSAAARSV	Misc Kulakovskiy et al.(2013) LEF1_HUMAN.H11MO.0.A	0.659	0.797
Lef1 M09402_2.00	Mus musculus	BSYTTTSWNNTBYH	DRVANNWSAAARSV	Misc Kulakovskiy et al.(2013) LEF1_MOUSE.H11MO.0.B	0.659	0.797
LEF1 M11311_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q2_01	0.659	0.797
LEF1 M11312_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q3	0.659	0.797
LEF1 M11313_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q4	0.659	0.797
LEF1 M11314_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q5_01	0.659	0.797
LEF1 M11315_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LEF1_Q5	0.659	0.797
LEF1 M05773_2.00	Homo sapiens	ASATCAAAG	CTTTGATST	SELEX Yin et al.(2017) LEF1_eDBD_Methyl-HT-SELEX_1	0.659	0.797
LEF1 M05774_2.00	Homo sapiens	WCATCGRGGCGCTGW	WCAGCGCCYCGATGW	SELEX Yin et al.(2017) LEF1_eDBD_Methyl-HT-SELEX_2	0.659	0.797
LEF1 M05777_2.00	Homo sapiens	ASATCAAAG	CTTTGATST	SELEX Yin et al.(2017) LEF1_FL_Methyl-HT-SELEX_1	0.659	0.797
LEF1 M05778_2.00	Homo sapiens	ACATCGRGRCGCTGW	WCAGCGYCYCGATGT	SELEX Yin et al.(2017) LEF1_FL_Methyl-HT-SELEX_2	0.659	0.797
pan M06451_2.00	Drosophila melanogaster	DWYCAAAD	HTTTGRWH	B1H Zhu et al.(2011) pan_FlyReg_FBgn0085432	0.659	0.768
pan M08428_2.00	Drosophila melanogaster	WHNAAAVRNRSCGM	KCGSYNYBTTTNDW	ChIP-chip Mathelier et al.(2014) MA0237.2	0.659	0.768
pan M11337_2.00	Drosophila melanogaster	AAGATCAAAGG	CCTTTGATCTT	Transfac Matys et al.(2006) I$TCF_1	0.659	0.768
pan M11338_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$TCF_Q6	0.659	0.768
Tcf7 M00193_2.00	Mus musculus	HNHNNNNNN	NNNNNNDND	PBM Badis et al.(2009) Tcf7_0950	0.634	0.797
Tcf7 M03532_2.00	Mus musculus	AAASATCAAAGV	BCTTTGATSTTT	SELEX Jolma et al.(2013) Tcf7_1	0.634	0.797
TCF7 M05755_2.00	Homo sapiens	DSATCAAWS	SWTTGATSH	SELEX Yin et al.(2017) TCF7_eDBD_HT-SELEX_1	0.634	0.797
TCF7 M05756_2.00	Homo sapiens	WCWKCGYCYCGWTGW	WCAWCGRGRCGMWGW	SELEX Yin et al.(2017) TCF7_eDBD_HT-SELEX_2	0.634	0.797
TCF7 M05890_2.00	Homo sapiens	NNASATCAAASNN	NNSTTTGATSTNN	SMiLE-seq Isakova et al.(2017) TCF7	0.634	0.797
TCF7 M09386_2.00	Homo sapiens	NBBCTTTSAWSTBNBN	NVNVASWTSAAAGVVN	Misc Kulakovskiy et al.(2013) TCF7_HUMAN.H11MO.0.A	0.634	0.797
Tcf7 M09400_2.00	Mus musculus	VVRVADSAAARVVVNV	BNBBBYTTTSHTBYBB	Misc Kulakovskiy et al.(2013) TCF7_MOUSE.H11MO.0.A	0.634	0.797
TCF7 M11294_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF1_Q5_01	0.634	0.797
TCF7 M11295_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF1_Q5	0.634	0.797
TCF7 M05757_2.00	Homo sapiens	RSATCAAAS	STTTGATSY	SELEX Yin et al.(2017) TCF7_eDBD_Methyl-HT-SELEX_1	0.634	0.797
TCF7 M05758_2.00	Homo sapiens	WCAWCGRGRCGMWGW	WCWKCGYCYCGWTGW	SELEX Yin et al.(2017) TCF7_eDBD_Methyl-HT-SELEX_2	0.634	0.797
pop-1 M00712_2.00	Caenorhabditis elegans	NNHDWVNNNN	NNNNBWHDNN	PBM Narasimhan et al.(2015) pTH9135	0.567	0.580
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MCOS_0000930001-mRNA-1	Sox	84	152	VKKPLNAFMLFMKEMRSKVVAECTMKESAAINQILGRKWHALPREEQAKFYEMARKEKELHQRMYPGWS

Links
Other Sox family TFs
Other *Mesocestoides corti* TFs

501 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB006353	Anopheles albimanus	AALB006353	N
AARA001116	Anopheles arabiensis	AARA001116	N
AATE009201	Anopheles atroparvus	AATE009201	N
ACHR008059	Anopheles christyi	ACHR008059	N
ADAC006270	Anopheles darlingi	ADAC006270	N
AEPI005804	Anopheles epiroticus	AEPI005804	N
AFAF013010	Anopheles farauti	AFAF013010	N
AGAP000062	Anopheles gambiae	AGAP000062	N
AMEM002515	Anopheles merus	AMEM002515	N
ASIS003103	Anopheles sinensis	ASIS003103	N
ASIS003374	Anopheles sinensis	ASIS003374	N
ASTEI06199	Anopheles stephensi	ASTEI06199	N

MCOS_0000930001 (Mesocestoides corti) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

501 Related TFs

MCOS_0000930001 **(Mesocestoides corti)
Sox**