TTAC_0000092501 (Hydatigera taeniaeformis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 TTAC_0000092501 T337243_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sox6
M00828_2.00 		Mus musculus
WTTGTNNNN
NNNNACAAW		 PBM
Weirauch et al.(2013)
pTH3862 		0.467 0.435
SOX6
M05892_2.00 		Homo sapiens
DRACAATRVN
NBYATTGTYH		 SMiLE-seq
Isakova et al.(2017)
SOX6 		0.467 0.435
Sox6
M08169_2.00 		Mus musculus
BCWTTGTYYY
RRRACAAWGV		 ChIP-seq
Mathelier et al.(2014)
MA0515.1 		0.467 0.435
Sox6
M09640_2.00 		Mus musculus
BHWTTGTBNN
NNVACAAWDV		 Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627 		0.467 0.435
SOX6
M11300_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX6_Q5 		0.467 0.435
Sox5
M00203_2.00 		Mus musculus
ATTGTBNN
NNVACAAT		 PBM
Badis et al.(2009)
Sox5_3459 		0.440 0.420
SOX5
M05894_2.00 		Homo sapiens
DVACAATRVN
NBYATTGTBH		 SMiLE-seq
Isakova et al.(2017)
SOX5 		0.440 0.420
Sox5
M02719_2.00 		Mus musculus
NAACAAT
ATTGTTN		 SELEX
Mathelier et al.(2014)
MA0087.1 		0.440 0.420
SOX5
M09390_2.00 		Homo sapiens
NAACAATN
NATTGTTN		 Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C 		0.440 0.420
Sox5
M09404_2.00 		Mus musculus
NAACAATN
NATTGTTN		 Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C 		0.440 0.420
SOX5
M11309_2.00 		Homo sapiens
NNAACAATNN
NNATTGTTNN		 Transfac
Matys et al.(2006)
V$SOX5_01 		0.440 0.420
SOX5
M11310_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX5_Q5 		0.440 0.420
Sox13
M00212_2.00 		Mus musculus
RAACAATW
WATTGTTY		 PBM
Badis et al.(2009)
Sox13_1718 		0.440 0.391
SOX13
M08166_2.00 		Homo sapiens
NNACAATGVNN
NNBCATTGTNN		 ChIP-seq
Mathelier et al.(2014)
MA1120.1 		0.440 0.391
Sox15
M03973_2.00 		Drosophila melanogaster
WYTGTTCGGTD
HACCGAACARW		 SELEX
Nitta et al.(2015)
Sox15_1 		0.427 0.362
Sox15
M03974_2.00 		Drosophila melanogaster
VACAATDNCATTGTN
NACAATGNHATTGTB		 SELEX
Nitta et al.(2015)
Sox15_2 		0.427 0.362
Sox15
M06450_2.00 		Drosophila melanogaster
RWACAATR
YATTGTWY		 B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613 		0.427 0.362
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TTAC_0000092501-mRNA-1 Sox 76 144

Links

Other Sox family TFs
Other Hydatigera taeniaeformis TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04545 Aegilops tauschii F775_04545 N
F775_11333 Aegilops tauschii F775_11333 N
BRADI5G01900 Brachypodium distachyon BRADI5G01900 N
BRADI5G05110 Brachypodium distachyon BRADI5G05110 N
MLOC_62844 Hordeum vulgare MLOC_62844 N
MLOC_44850 Hordeum vulgare MLOC_44850 N
MLOC_43888 Hordeum vulgare MLOC_43888 N
LPERR04G04520 Leersia perrieri LPERR04G04520 N
BGIOSGA040642 Oryza indica BGIOSGA040642 N
OMERI03G04020 Oryza meridionalis OMERI03G04020 N
ONIVA01G07170 Oryza nivara ONIVA01G07170 N
OPUNC04G05630 Oryza punctata OPUNC04G05630 N
ORUFI04G07860 Oryza rufipogon ORUFI04G07860 N
OS04G0301500 Oryza sativa OS04G0301500 N
Pavir.Gb02374 Panicum virgatum Pavir.Gb02374 N
Pavir.J18808 Panicum virgatum Pavir.J18808 N
Pavir.Gb02205 Panicum virgatum Pavir.Gb02205 N
Pavir.Ga02257 Panicum virgatum Pavir.Ga02257 N
Pavir.Ga02256 Panicum virgatum Pavir.Ga02256 N
Pavir.Ga02255 Panicum virgatum Pavir.Ga02255 N
Si010812m.g Setaria italica Si010812m.g N
Si010685m.g Setaria italica Si010685m.g N
Si010413m.g Setaria italica Si010413m.g N
Sb07g004190 Sorghum bicolor Sb07g004190 N
Traes_2BL_070D9E2AD Triticum aestivum Traes_2BL_070D9E2AD N
Traes_2BL_8FED05903 Triticum aestivum Traes_2BL_8FED05903 N
Traes_2DL_8BE259F4B Triticum aestivum Traes_2DL_8BE259F4B N
Traes_2DL_DE3909A32 Triticum aestivum Traes_2DL_DE3909A32 N
Traes_4DL_55503B3CD Triticum aestivum Traes_4DL_55503B3CD N
Traes_5AL_331CE753D Triticum aestivum Traes_5AL_331CE753D N
Traes_5AL_EDF2DD187 Triticum aestivum Traes_5AL_EDF2DD187 N
TRIUR3_16896 Triticum urartu TRIUR3_16896 N
GRMZM2G042895 Zea mays GRMZM2G042895 N
GRMZM2G042893 Zea mays GRMZM2G042893 N