SNOG_06135 (Stagonospora nodorum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 SNOG_06135 T342085_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.910 0.910
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.910 0.910
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.910 0.910
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.814 0.814
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.814 0.814
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.814 0.814
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.814 0.814
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.814 0.814
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.814 0.814
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.814 0.814
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.814 0.814
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.814 0.814
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.814 0.814
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNOT_06135 TBP 53 135
SNOT_06135 TBP 143 226

Links

Other TBP family TFs
Other Stagonospora nodorum TFs

770 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_16539 Cicer arietinum Ca_16539 N
Cla019320 Citrullus lanatus Cla019320 N
Cla010983 Citrullus lanatus Cla010983 N
Cucsa.174600 Cucumis sativus Cucsa.174600 I
GLYMA06G22790 Glycine max GLYMA06G22790 N
MLOC_77331 Hordeum vulgare MLOC_77331 I
LPERR02G25270 Leersia perrieri LPERR02G25270 N
MDP0000245538 Malus domestica MDP0000245538 N
cassava6132.valid.m1 Manihot esculenta cassava6132.valid.m1 N
GSMUA_Achr3G06370_001 Musa acuminata GSMUA_Achr3G06370_001 N
GSMUA_Achr7G20100_001 Musa acuminata GSMUA_Achr7G20100_001 N
OBART02G30940 Oryza barthii OBART02G30940 N
OB09G20380 Oryza brachyantha OB09G20380 N
OB03G34880 Oryza brachyantha OB03G34880 N
OGLUM02G31630 Oryza glumaepatula OGLUM02G31630 N
OLONG_024366 Oryza longistaminata OLONG_024366 N
ONIVA02G34070 Oryza nivara ONIVA02G34070 N
ORUFI02G32620 Oryza rufipogon ORUFI02G32620 N
Pavir.Bb02522 Panicum virgatum Pavir.Bb02522 N
PDK_20s1481031g001 Phoenix dactylifera PDK_20s1481031g001 N
PDK_20s1466661g003 Phoenix dactylifera PDK_20s1466661g003 N
PDK_20s1615261g001 Phoenix dactylifera PDK_20s1615261g001 N
Pm025009 Prunus mume Pm025009 N
PGSC0003DMG400024523 Solanum tuberosum PGSC0003DMG400024523 N
TCM_014392 Theobroma cacao TCM_014392 I
Traes_5AL_85F3BE385 Triticum aestivum Traes_5AL_85F3BE385 N