Bra030855 (Brassica rapa)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 Bra030855 T342167_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.850 0.850
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.850 0.850
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.850 0.850
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.826 0.826
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.826 0.826
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.826 0.826
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.826 0.826
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.826 0.826
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.826 0.826
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.826 0.826
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.826 0.826
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.826 0.826
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.826 0.826
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030855.1-P TBP 22 104
Bra030855.1-P TBP 112 195

Links

Other TBP family TFs
Other Brassica rapa TFs

790 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007945 Ailuropoda melanoleuca ENSAMEG00000007945 N
AEPI003098 Anopheles epiroticus AEPI003098 N
AMEC001813 Anopheles melas AMEC001813 N
GB45841 Apis mellifera GB45841 N
ACEP19659 Atta cephalotes ACEP19659 N
ACEP15823 Atta cephalotes ACEP15823 N
estExt_fgenesh2_pg.C_20012 Branchiostoma floridae estExt_fgenesh2_pg.C_20012 N
Cflo_16445--XP_624772.1_APIME Camponotus floridanus Cflo_16445--XP_624772.1_APIME N
Cflo_01443--XP_624772.1_APIME Camponotus floridanus Cflo_01443--XP_624772.1_APIME N
klf4 Danio rerio ENSDARG00000079922 N
Hsal_02965--XP_624772.1_APIME Harpegnathos saltator Hsal_02965--XP_624772.1_APIME N
LDEC008394 Leptinotarsa decemlineata LDEC008394 N
LLOJ001749 Lutzomyia longipalpis LLOJ001749 N
MESCA001789 Megaselia scalaris MESCA001789 N
ENSMGAG00000006899 Meleagris gallopavo ENSMGAG00000006899 N
NV16825 Nasonia vitripennis NV16825 N
KLF5 Ochotona princeps ENSOPRG00000007620 N
OESDEN_21938 Oesophagostomum dentatum OESDEN_21938 N
KLF12 Oryctolagus cuniculus ENSOCUG00000004244 N
KLF8 Otolemur garnettii ENSOGAG00000000346 N
PHUM483400 Pediculus humanus PHUM483400 N
Pvit_06515 Pogona vitticeps Pvit_06515 N
KLF3 Procavia capensis ENSPCAG00000015573 N
nRc.2.0.1.g28453 Romanomermis culicivorax nRc.2.0.1.g28453 N
SBAD_0001243701 Soboliphyme baturini SBAD_0001243701 N
SINV23345 Solenopsis invicta SINV23345 N
ENSSSCG00000012353 Sus scrofa ENSSSCG00000012353 N
KLF8 Sus scrofa ENSSSCG00000012352 N
D917_05405 Trichinella nativa D917_05405 N
D917_09827 Trichinella nativa D917_09827 N
KLF3 Tupaia belangeri ENSTBEG00000015639 N
ENSTBEG00000016090 Tupaia belangeri ENSTBEG00000016090 N
ENSTTRG00000010639 Tursiops truncatus ENSTTRG00000010639 N
Tal_R005095 Tyto alba Tal_R005095 N
Tal_R002680 Tyto alba Tal_R002680 N
KLF8 Vicugna pacos ENSVPAG00000009577 N
ENSXMAG00000007445 Xiphophorus maculatus ENSXMAG00000007445 N