estExt_Genewise2.C_Chr_060259 (Micromonas sp RCC299)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 estExt_Genewise2.C_Chr_060259 T343158_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.790 0.790
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.790 0.790
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.790 0.790
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.790 0.790
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.790 0.790
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.790 0.790
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.790 0.790
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.790 0.790
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.790 0.790
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.790 0.790
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.784 0.784
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.784 0.784
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
91006 TBP 38 120
91006 TBP 128 211

Links

Other TBP family TFs
Other Micromonas sp RCC299 TFs

715 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_201123 Agaricus bisporus AGABI2DRAFT_201123 N
M378DRAFT_9274 Amanita muscaria M378DRAFT_9274 N
BOTBODRAFT_50643 Botryobasidium botryosum BOTBODRAFT_50643 N
CERSUDRAFT_118039 Ceriporiopsis subvermispora CERSUDRAFT_118039 N
JAAARDRAFT_72641 Jaapia argillacea JAAARDRAFT_72641 N
K443DRAFT_670931 Laccaria amethystina K443DRAFT_670931 N
Moror_14481 Moniliophthora roreri Moror_14481 N
PAXINDRAFT_169835 Paxillus involutus PAXINDRAFT_169835 N
PAXRUDRAFT_15381 Paxillus rubicundulus PAXRUDRAFT_15381 N
PILCRDRAFT_227592 Piloderma croceum PILCRDRAFT_227592 N
PILCRDRAFT_818762 Piloderma croceum PILCRDRAFT_818762 N
PIIN_05387 Piriformospora indica PIIN_05387 N
PISMIDRAFT_677624 Pisolithus microcarpus PISMIDRAFT_677624 N
M404DRAFT_118248 Pisolithus tinctorius M404DRAFT_118248 N
V565_042130 Rhizoctonia solani V565_042130 N
SCHCODRAFT_82290 Schizophyllum commune SCHCODRAFT_82290 N
CY34DRAFT_802736 Suillus luteus CY34DRAFT_802736 N
M407DRAFT_127717 Tulasnella calospora M407DRAFT_127717 N