orange1.1g029591m.g (Citrus sinensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 orange1.1g029591m.g T343182_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.837 0.837
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.837 0.837
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.837 0.837
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.819 0.819
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.819 0.819
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.819 0.819
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.819 0.819
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.819 0.819
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.819 0.819
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.819 0.819
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.819 0.819
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.819 0.819
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.819 0.819
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g029591m TBP 14 95
orange1.1g029591m TBP 103 186
orange1.1g031013m TBP 14 47
orange1.1g031013m TBP 46 71
orange1.1g031013m TBP 79 162

Links

Other TBP family TFs
Other Citrus sinensis TFs

790 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR06G23420 Leersia perrieri LPERR06G23420 N
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N
BGIOSGA020507 Oryza indica BGIOSGA020507 N
OMERI06G27920 Oryza meridionalis OMERI06G27920 N
ONIVA06G30950 Oryza nivara ONIVA06G30950 N
OPUNC06G25510 Oryza punctata OPUNC06G25510 N
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N
OS06G0726300 Oryza sativa OS06G0726300 N
TRIUR3_05221 Triticum urartu TRIUR3_05221 N
GRMZM2G389557 Zea mays GRMZM2G389557 N