CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo4g140760 *(Brassica oleracea)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	Bo4g140760	T343742_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.943	0.542
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.943	0.542
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.937	0.562
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.934	0.500
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.933	0.531
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.933	0.531
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.933	0.531
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.933	0.531
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.932	0.562
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.931	0.583
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.931	0.521
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.930	0.573
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.927	0.500
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.927	0.500
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.927	0.500
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.927	0.490
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.924	0.458
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.917	0.542
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.917	0.490
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.917	0.490
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.917	0.490
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.917	0.490
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.914	0.479
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.914	0.531
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.901	0.479
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.898	0.500
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.896	0.479
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.896	0.479
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.895	0.531
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.895	0.531
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.887	0.479
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.883	0.469
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.882	0.479
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.832	0.469
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.832	0.469
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo4g140760.1	TCP	44	174	KSSKDGHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLRHAEPSIISATGTGIKPAADSVSRSQVSNGFWANETGFGIVGANPTGGGLDLNCGIGFLGFDFNGSSDMGFENNQMPQVRNVGG

Links
Other TCP family TFs
Other *Brassica oleracea* TFs

647 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000004478	Ailuropoda melanoleuca	ENSAMEG00000004478	N
ENSBTAP00000026252-D1	Bos grunniens	ENSBTAP00000026252-D1	N
RLF	Bos taurus	ENSBTAG00000019695	N
RLF	Callithrix jacchus	ENSCJAG00000002821	N
RLF	Canis familiaris	ENSCAFG00000003003	N
RLF	Cavia porcellus	ENSCPOG00000013002	N
ENSCSAG00000001143	Chlorocebus sabaeus	ENSCSAG00000001143	N
RLF	Dasypus novemcinctus	ENSDNOG00000035279	N
Rlf	Dipodomys ordii	ENSDORG00000010416	N
RLF	Echinops telfairi	ENSETEG00000011371	N
RLF	Erinaceus europaeus	ENSEEUG00000001288	N
RLF	Felis catus	ENSFCAG00000031737	N
RLF	Gorilla gorilla	ENSGGOG00000015221	N
RLF	Homo sapiens	ENSG00000117000	N
RLF	Loxodonta africana	ENSLAFG00000015722	N
ENSP00000361857	Macaca fascicularis	ENSP00000361857	N
RLF	Macaca mulatta	ENSMMUG00000032180	N
RLF	Microcebus murinus	ENSMICG00000000307	N
Rlf	Mus musculus	ENSMUSG00000049878	N
Myotis_brandtii_RLF_10028970	Myotis brandtii	Myotis_brandtii_RLF_10028970	N
RLF	Myotis lucifugus	ENSMLUG00000001580	N
ENSNLEG00000012124	Nomascus leucogenys	ENSNLEG00000012124	N
RLF	Otolemur garnettii	ENSOGAG00000002764	N
ENSOARG00000020187	Ovis aries	ENSOARG00000020187	N
RLF	Pan troglodytes	ENSPTRG00000000585	N
ENSPANG00000018124	Papio anubis	ENSPANG00000018124	N
ENSPPYG00000001494	Pongo abelii	ENSPPYG00000001494	N
RLF	Procavia capensis	ENSPCAG00000015009	N
RLF	Pteropus vampyrus	ENSPVAG00000015936	N
Rlf	Rattus norvegicus	ENSRNOG00000027921	N
RLF	Sorex araneus	ENSSARG00000000173	N
RLF	Sus scrofa	ENSSSCG00000003670	N
RLF	Tupaia belangeri	ENSTBEG00000013653	N
RLF	Tursiops truncatus	ENSTTRG00000005870	N

Bo4g140760 (Brassica oleracea) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

647 Related TFs

Bo4g140760 **(Brassica oleracea)
TCP**