Bra012990 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra012990 T343778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.971 0.544
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.971 0.538
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.943 0.380
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.921 0.405
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.921 0.405
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.907 0.342
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.907 0.342
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.891 0.316
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.883 0.310
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.867 0.285
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.865 0.285
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.865 0.285
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.858 0.278
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.857 0.291
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.857 0.291
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.857 0.291
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012990.1-P TCP 66 365

Links

Other TCP family TFs
Other Brassica rapa TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_000580 Acremonium chrysogenum ACRE_000580 I
AB04329.1 Alternaria brassicicola AB04329.1 I
AOL_s00054g333 Arthrobotrys oligospora AOL_s00054g333 I
MCYG_00811 Arthroderma otae MCYG_00811 I
fgenesh1_pm.00866_#_387 Aspergillus carbonarius fgenesh1_pm.00866_#_387 I
ACLA_038830 Aspergillus clavatus CADACLAG00003443 I
CADAFLAG00002554 Aspergillus flavus CADAFLAG00002554 I
AFUA_3G10930 Aspergillus fumigatus CADAFUAG00005490 I
ANIA_04900 Aspergillus nidulans CADANIAG00005502 I
CADANGAG00002187 Aspergillus niger CADANGAG00002187 I
CADAORAG00001246 Aspergillus oryzae CADAORAG00001246 I
EURHEDRAFT_412951 Aspergillus ruber EURHEDRAFT_412951 I
ATEG_04617 Aspergillus terreus CADATEAG00008143 I
M437DRAFT_73685 Aureobasidium melanogenum M437DRAFT_73685 I
M438DRAFT_217221 Aureobasidium pullulans M438DRAFT_217221 I
AUEXF2481DRAFT_668051 Aureobasidium subglaciale AUEXF2481DRAFT_668051 I
BAUCODRAFT_62407 Baudoinia compniacensis BAUCODRAFT_62407 I
BBA_00899 Beauveria bassiana BBA_00899 I
COCC4DRAFT_159921 Bipolaris maydis COCC4DRAFT_159921 I
COCMIDRAFT_84886 Bipolaris oryzae COCMIDRAFT_84886 I
COCSADRAFT_40030 Bipolaris sorokiniana COCSADRAFT_40030 I
COCVIDRAFT_34332 Bipolaris victoriae COCVIDRAFT_34332 I
COCCADRAFT_95285 Bipolaris zeicola COCCADRAFT_95285 I
BDDG_02837 Blastomyces dermatitidis BDDG_02837 I
BGHDH14_bgh06173 Blumeria graminis BGHDH14_bgh06173 I
Bcin10g06020 Botrytis cinerea Bcin10g06020 I
PVAR5_7790 Byssochlamys spectabilis PVAR5_7790 I
A1O1_00107 Capronia coronata A1O1_00107 I
A1O3_02104 Capronia epimyces A1O3_02104 I
PV04_01966 Capronia semiimmersa PV04_01966 I
CHGG_03387 Chaetomium globosum CHGG_03387 I
CTHT_0022340 Chaetomium thermophilum CTHT_0022340 I
Z519_03446 Cladophialophora bantiana Z519_03446 I
G647_00147 Cladophialophora carrionii G647_00147 I
PV07_10701 Cladophialophora immunda PV07_10701 I
A1O5_04168 Cladophialophora psammophila A1O5_04168 I
A1O7_00138 Cladophialophora yegresii A1O7_00138 I
CPUR_05559 Claviceps purpurea CPUR_05559 I
CIMG_03780 Coccidioides immitis CIMG_03780 I
CPC735_005330 Coccidioides posadasii CPC735_005330 I
estExt_fgenesh1_pm.C_10324 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_10324 I
CFIO01_13451 Colletotrichum fioriniae CFIO01_13451 I
CGGC5_5611 Colletotrichum gloeosporioides CGGC5_5611 I
GLRG_03667 Colletotrichum graminicola GLRG_03667 I
CH063_12375 Colletotrichum higginsianum CH063_12375 I
Cob_12526 Colletotrichum orbiculare Cob_12526 I
CSUB01_04147 Colletotrichum sublineola CSUB01_04147 I
W97_02725 Coniosporium apollinis W97_02725 I
CCM_02819 Cordyceps militaris CCM_02819 I
estExt_Genewise1Plus.C_10752 Cryphonectria parasitica estExt_Genewise1Plus.C_10752 I
HMPREF1541_07740 Cyphellophora europaea HMPREF1541_07740 I
H072_1712 Dactylellina haptotyla H072_1712 I
DOTSEDRAFT_68942 Dothistroma septosporum DOTSEDRAFT_68942 I
DRE_01409 Drechslerella stenobrocha DRE_01409 I
EPUS_05699 Endocarpon pusillum EPUS_05699 I
A1O9_06559 Exophiala aquamarina A1O9_06559 I
HMPREF1120_05672 Exophiala dermatitidis HMPREF1120_05672 I
PV10_09083 Exophiala mesophila PV10_09083 I
PV06_04017 Exophiala oligosperma PV06_04017 I
PV11_07815 Exophiala sideris PV11_07815 I
PV08_06223 Exophiala spinifera PV08_06223 I
PV05_10761 Exophiala xenobiotica PV05_10761 I
Z517_08833 Fonsecaea pedrosoi Z517_08833 I
FFUJ_03322 Fusarium fujikuroi FFUJ_03322 I
FGRRES_06664 Fusarium graminearum FGRRES_06664 I
FOXG_02277 Fusarium oxysporum FOXG_02277 I
FPSE_01581 Fusarium pseudograminearum FPSE_01581 I
NechaG60448 Fusarium solani NechaG60448 I
FVEG_05452 Fusarium verticillioides FVEG_05452 I
GGTG_09416 Gaeumannomyces graminis GGTG_09416 I
M7I_7498 Glarea lozoyensis M7I_7498 I
CMQ_7725 Grosmannia clavigera CMQ_7725 I
HCBG_03752 Histoplasma capsulatum HCBG_03752 I
MPH_05512 Macrophomina phaseolina MPH_05512 I
MGG_05306 Magnaporthe oryzae MGG_05306 I
MAPG_03349 Magnaporthe poae MAPG_03349 I
MBM_08838 Marssonina brunnea MBM_08838 I
MAC_08263 Metarhizium acridum MAC_08263 I
MAM_02480 Metarhizium album MAM_02480 I
MANI_019405 Metarhizium anisopliae MANI_019405 I
MBR_00842 Metarhizium brunneum MBR_00842 I
MGU_06347 Metarhizium guizhouense MGU_06347 I
MAJ_06599 Metarhizium majus MAJ_06599 I
X797_007246 Metarhizium robertsii X797_007246 I
MCYG_00811 Microsporum canis MCYG_00811 I
MGYG_01159 Microsporum gypseum MGYG_01159 I
MYCTH_101394 Myceliophthora thermophila MYCTH_101394 I
fgenesh1_pg.C_scaffold_1000835 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1000835 I
estExt_fgenesh1_pg.C_chr_10720 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10720 I
estExt_Genewise1.C_sca_3_chr4_2_01547 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_01547 I
UCRNP2_4083 Neofusicoccum parvum UCRNP2_4083 I
NFIA_066330 Neosartorya fischeri CADNFIAG00005956 I
NCU00223 Neurospora crassa NCU00223 D
estExt_fgenesh3_kg.C_50227 Neurospora discreta estExt_fgenesh3_kg.C_50227 I
NEUTE1DRAFT_100805 Neurospora tetrasperma NEUTE1DRAFT_100805 I
OIDMADRAFT_111900 Oidiodendron maius OIDMADRAFT_111900 I
F503_05565 Ophiostoma piceae uamh F503_05565 I
PABG_02318 Paracoccidioides brasiliensis PABG_02318 I
PAAG_02067 Paracoccidioides sp lutzii PAAG_02067 I
Pc18g00880 Penicillium chrysogenum Pc18g00880 I
PDIP_74650 Penicillium digitatum PDIP_74650 I
PITC_012820 Penicillium italicum PITC_012820 I
PMAA_023600 Penicillium marneffei PMAA_023600 I
PDE_05036 Penicillium oxalicum PDE_05036 I
PCH_Pc18g00880 Penicillium rubens PCH_Pc18g00880 I
U727_00433930151 Penicillium solitum U727_00433930151 I
PFICI_11498 Pestalotiopsis fici PFICI_11498 I
SNOG_11878 Phaeosphaeria nodorum SNOG_11878 I
PODANS_7_2810 Podospora anserina PODANS_7_2810 I
MYCFIDRAFT_184912 Pseudocercospora fijiensis MYCFIDRAFT_184912 I
GMDG_00332 Pseudogymnoascus destructans GMDG_00332 I
PTT_13034 Pyrenophora teres PTT_13034 I
PTRG_00227 Pyrenophora triticirepentis PTRG_00227 I
Z518_07984 Rhinocladiella mackenziei Z518_07984 I
SAPIO_CDS5801 Scedosporium apiospermum SAPIO_CDS5801 I
SBOR_2719 Sclerotinia borealis SBOR_2719 I
SS1G_07344 Sclerotinia sclerotiorum SS1G_07344 I
SETTUDRAFT_167132 Setosphaeria turcica SETTUDRAFT_167132 I
SMAC_05297 Sordaria macrospora SMAC_05297 I
SEPMUDRAFT_145695 Sphaerulina musiva SEPMUDRAFT_145695 I
SPBR_00455 Sporothrix brasiliensis SPBR_00455 I
HMPREF1624_06588 Sporothrix schenckii HMPREF1624_06588 I
S40288_01069 Stachybotrys chartarum S40288_01069 I
S40285_02045 Stachybotrys chlorohalonata S40285_02045 I
SNOG_11878 Stagonospora nodorum SNOG_11878 I
PMAA_023600 Talaromyces marneffei PMAA_023600 I
TSTA_032010 Talaromyces stipitatus TSTA_032010 I
THITE_126971 Thielavia terrestris THITE_126971 I
VHEMI02079 Torrubiella hemipterigena VHEMI02079 I
TRIATDRAFT_301990 Trichoderma atroviride TRIATDRAFT_301990 I
TRIREDRAFT_73417 Trichoderma reesei TRIREDRAFT_73417 I
TRIVIDRAFT_56326 Trichoderma virens TRIVIDRAFT_56326 I
TEQG_01552 Trichophyton equinum TEQG_01552 I
H101_07787 Trichophyton interdigitale H101_07787 I
H102_07752 Trichophyton rubrum H102_07752 I
H105_07778 Trichophyton soudanense H105_07778 I
TESG_02451 Trichophyton tonsurans TESG_02451 I
GSTUM_00003085001 Tuber melanosporum GSTUM_00003085001 I
UREG_07503 Uncinocarpus reesii UREG_07503 I
UV8b_2805 Ustilaginoidea virens UV8b_2805 I
PV09_02747 Verruconis gallopava PV09_02747 I
VDBG_08802 Verticillium albo atrum VDBG_08802 I
VDBG_08802 Verticillium alfalfae VDBG_08802 I
VDAG_06460 Verticillium dahliae VDAG_06460 I
Mycgr3G107152 Zymoseptoria tritici Mycgr3G107152 I