Bra021586 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra021586 T343782_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.957 0.833
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.956 0.822
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.948 0.711
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.948 0.711
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.948 0.711
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.915 0.600
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.907 0.500
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.903 0.533
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.901 0.522
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.872 0.489
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.867 0.478
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.867 0.478
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.836 0.456
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.829 0.456
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.823 0.433
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.823 0.433
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021586.1-P TCP 43 167

Links

Other TCP family TFs
Other Brassica rapa TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_12825 Aegilops tauschii F775_12825 N
F775_13070 Aegilops tauschii F775_13070 N
F775_18370 Aegilops tauschii F775_18370 N
F775_18978 Aegilops tauschii F775_18978 N
F775_27817 Aegilops tauschii F775_27817 N
F775_01974 Aegilops tauschii F775_01974 N
MLOC_14170 Hordeum vulgare MLOC_14170 N
MLOC_68932 Hordeum vulgare MLOC_68932 N
Traes_6BS_938E60C80 Triticum aestivum Traes_6BS_938E60C80 N
Traes_5DL_A9969D596 Triticum aestivum Traes_5DL_A9969D596 N
Traes_6BS_945FD8DAC1 Triticum aestivum Traes_6BS_945FD8DAC1 N
Traes_6BS_9FAF15CD0 Triticum aestivum Traes_6BS_9FAF15CD0 N
Traes_6BS_A3531CD43 Triticum aestivum Traes_6BS_A3531CD43 N
Traes_6BS_B8A0BF56F Triticum aestivum Traes_6BS_B8A0BF56F N
Traes_6BS_C3247654A Triticum aestivum Traes_6BS_C3247654A N
Traes_6BS_EE1BBAFD1 Triticum aestivum Traes_6BS_EE1BBAFD1 N
Traes_6BS_FA68506CF Triticum aestivum Traes_6BS_FA68506CF N
Traes_6DS_48337A953 Triticum aestivum Traes_6DS_48337A953 N
Traes_6DS_87E97B55C Triticum aestivum Traes_6DS_87E97B55C N
Traes_7BS_598310C32 Triticum aestivum Traes_7BS_598310C32 N
Traes_7DS_5B1210681 Triticum aestivum Traes_7DS_5B1210681 N
Traes_7DS_6B1F6F5E5 Triticum aestivum Traes_7DS_6B1F6F5E5 N
Traes_6AS_E6F39D946 Triticum aestivum Traes_6AS_E6F39D946 N
Traes_1AL_3C796C3D3 Triticum aestivum Traes_1AL_3C796C3D3 N
Traes_1AL_C6CACDF78 Triticum aestivum Traes_1AL_C6CACDF78 N
Traes_1BS_613E9DBA6 Triticum aestivum Traes_1BS_613E9DBA6 N
Traes_1DL_0CDB6989D Triticum aestivum Traes_1DL_0CDB6989D N
Traes_1DL_5E046EFA0 Triticum aestivum Traes_1DL_5E046EFA0 N
Traes_2BS_0D569FC2A Triticum aestivum Traes_2BS_0D569FC2A N
Traes_3AS_D6334436F Triticum aestivum Traes_3AS_D6334436F N
TRAES3BF181700010CFD_g Triticum aestivum TRAES3BF181700010CFD_g N
Traes_3DS_31B0043F6 Triticum aestivum Traes_3DS_31B0043F6 N
Traes_5AL_DB9E0AA8D Triticum aestivum Traes_5AL_DB9E0AA8D N
Traes_6AS_36EAEADDD Triticum aestivum Traes_6AS_36EAEADDD N
Traes_6BS_276ACF176 Triticum aestivum Traes_6BS_276ACF176 N
TRIUR3_06343 Triticum urartu TRIUR3_06343 N
TRIUR3_06344 Triticum urartu TRIUR3_06344 N
TRIUR3_06575 Triticum urartu TRIUR3_06575 N
GRMZM2G060114 Zea mays GRMZM2G060114 N