OBART07G03380 (Oryza barthii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 OBART07G03380 T344072_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.957 0.333
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.957 0.333
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.957 0.333
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.956 0.333
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART07G03380.1 TCP 9 151
OBART07G03380.1 TCP 266 361

Links

Other TCP family TFs
Other Oryza barthii TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN30944 Caenorhabditis brenneri CBN30944 I
CBG12674 Caenorhabditis briggsae CBG12674 I
che-1 Caenorhabditis elegans WBGene00000483 D
HPLM_0001518701 Haemonchus placei HPLM_0001518701 I
maker-nMf.1.1.scaf05782-augustus-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf05782-augustus-gene-0.8 I
Minc12570 Meloidogyne incognita Minc12570 I
NECAME_14596 Necator americanus NECAME_14596 I
NBR_0000131901 Nippostrongylus brasiliensis NBR_0000131901 I
scaffold142-EXSNAP2012.10 Pristionchus exspectatus scaffold142-EXSNAP2012.10 I
TCNE_0000019201 Toxocara canis TCNE_0000019201 I