Pm010118 (Prunus mume)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pm010118 T344555_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.915 0.391
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.912 0.384
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.905 0.384
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.905 0.384
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.905 0.384
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.887 0.377
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.870 0.355
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.861 0.362
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.861 0.362
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.826 0.333
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm010118 TCP 110 257

Links

Other TCP family TFs
Other Prunus mume TFs

292 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR09G00580 Leersia perrieri LPERR09G00580 N
OBART09G00800 Oryza barthii OBART09G00800 N
OBART09G00910 Oryza barthii OBART09G00910 N
ORGLA09G0007200 Oryza glaberrima ORGLA09G0007200 N
OGLUM09G01100 Oryza glumaepatula OGLUM09G01100 N
OGLUM09G01200 Oryza glumaepatula OGLUM09G01200 N
BGIOSGA030218 Oryza indica BGIOSGA030218 N
OLONG_000581 Oryza longistaminata OLONG_000581 N
OMERI09G00870 Oryza meridionalis OMERI09G00870 N
OMERI09G00940 Oryza meridionalis OMERI09G00940 N
ONIVA09G00830 Oryza nivara ONIVA09G00830 N
ONIVA09G01010 Oryza nivara ONIVA09G01010 N
OPUNC09G00550 Oryza punctata OPUNC09G00550 N
OPUNC09G00600 Oryza punctata OPUNC09G00600 N
ORUFI09G00830 Oryza rufipogon ORUFI09G00830 N
OS09G0116050 Oryza sativa OS09G0116050 N