Carubv10009348m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10009348m.g T344752_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.968 0.519
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.968 0.519
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.968 0.519
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.965 0.468
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.962 0.462
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.936 0.397
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.890 0.321
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.880 0.327
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.877 0.321
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.873 0.308
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.851 0.288
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.849 0.327
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.849 0.327
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.846 0.269
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009348m TCP 51 218

Links

Other TCP family TFs
Other Capsella rubella TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000001864 Anas platyrhynchos ENSAPLG00000001864 I 0.000
Afo_R013761 Aptenodytes forsteri Afo_R013761 I 0.000
ENSAMXG00000025867 Astyanax mexicanus ENSAMXG00000025867 I 0.000
ENSBTAP00000040938-D2 Bos grunniens ENSBTAP00000040938-D2 I 0.000
ENSBTAP00000052774-D5 Bos grunniens ENSBTAP00000052774-D5 I 0.000
ZBTB26 Bos taurus ENSBTAG00000038610 I 0.000
Brh_R009359 Buceros rhinoceros Brh_R009359 I 0.000
ZBTB26 Callithrix jacchus ENSCJAG00000021770 I 0.000
Aan_R009401 Calypte anna Aan_R009401 I 0.000
Cmyd_10017122 Chelonia mydas Cmyd_10017122 I 0.000
ENSCSAG00000019712 Chlorocebus sabaeus ENSCSAG00000019712 I 0.000
ZBTB26 Danio rerio ENSDARG00000028949 I 0.000
ZBTB26 Dasypus novemcinctus ENSDNOG00000045813 I 0.000
Zbtb26 Dipodomys ordii ENSDORG00000006402 I 0.000
ZBTB26 Echinops telfairi ENSETEG00000009868 I 0.000
ZBTB26 Equus caballus ENSECAG00000017397 I 0.000
ENSFALG00000014341 Ficedula albicollis ENSFALG00000014341 I 0.000
ENSGMOG00000002798 Gadus morhua ENSGMOG00000002798 I 0.000
ENSGALG00000001236 Gallus gallus ENSGALG00000001236 I 0.000
si:ch211-236k19.4 Gasterosteus aculeatus ENSGACG00000013351 I 0.000
Gfo_R007917 Geospiza fortis Gfo_R007917 I 0.000
ZBTB26 Gorilla gorilla ENSGGOG00000015134 I 0.000
ZBTB26 Homo sapiens ENSG00000171448 D 0.000
ENSSTOG00000004739 Ictidomys tridecemlineatus ENSSTOG00000004739 I 0.000
ENSLOCG00000002911 Lepisosteus oculatus ENSLOCG00000002911 I 0.000
ZBTB26 Loxodonta africana ENSLAFG00000012394 I 0.000
ENSP00000362760 Macaca fascicularis ENSP00000362760 I 0.000
ZBTB26 Macaca mulatta ENSMMUG00000000495 I 0.000
ENSMEUG00000015636 Macropus eugenii ENSMEUG00000015636 I 0.000
ZBTB26 Monodelphis domestica ENSMODG00000023552 I 0.000
Zbtb26 Mus musculus ENSMUSG00000050714 I 0.000
Myotis_brandtii_ZBTB26_10028431 Myotis brandtii Myotis_brandtii_ZBTB26_10028431 I 0.000
ZBTB26 Myotis lucifugus ENSMLUG00000014009 I 0.000
ENSNLEG00000017215 Nomascus leucogenys ENSNLEG00000017215 I 0.000
ZBTB26 Ochotona princeps ENSOPRG00000013334 I 0.000
Ogr13905 Ophisaurus gracilis Ogr13905 I 0.000
ENSONIG00000020657 Oreochromis niloticus ENSONIG00000020657 I 0.000
si:ch211-236k19.4 Oryzias latipes ENSORLG00000015695 I 0.000
ZBTB26 Otolemur garnettii ENSOGAG00000010685 I 0.000
ENSOARG00000019156 Ovis aries ENSOARG00000019156 I 0.000
ZBTB26 Pan troglodytes ENSPTRG00000021341 I 0.000
ENSPANG00000025839 Papio anubis ENSPANG00000025839 I 0.000
ENSPSIG00000001041 Pelodiscus sinensis ENSPSIG00000001041 I 0.000
ENSPFOG00000001590 Poecilia formosa ENSPFOG00000001590 I 0.000
Pvit_08508 Pogona vitticeps Pvit_08508 I 0.000
ENSPPYG00000019585 Pongo abelii ENSPPYG00000019585 I 0.000
ZBTB26 Procavia capensis ENSPCAG00000010332 I 0.000
ZBTB26 Pteropus vampyrus ENSPVAG00000017595 I 0.000
Zbtb26 Rattus norvegicus ENSRNOG00000009346 I 0.000
ENSSHAG00000008190 Sarcophilus harrisii ENSSHAG00000008190 I 0.000
ENSSSCG00000005580 Sus scrofa ENSSSCG00000005580 I 0.000
ENSSSCG00000005577 Sus scrofa ENSSSCG00000005577 I 0.000
ZBTB26 Taeniopygia guttata ENSTGUG00000018200 I 0.000
si:ch211-236k19.4 Tetraodon nigroviridis ENSTNIG00000011438 I 0.000
ZBTB26 Tursiops truncatus ENSTTRG00000016957 I 0.000
Tal_R003614 Tyto alba Tal_R003614 I 0.000
zbtb26 Xenopus tropicalis XB-GENE-5891654 I 0.000
ENSXMAG00000019575 Xiphophorus maculatus ENSXMAG00000019575 I 0.000