Carubv10023502m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10023502m.g T344768_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.931 0.578
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.931 0.578
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.931 0.578
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.930 0.578
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.928 0.569
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.910 0.569
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.889 0.461
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.887 0.480
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.887 0.480
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.864 0.471
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.864 0.471
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.841 0.431
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.829 0.402
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023502m TCP 27 187

Links

Other TCP family TFs
Other Capsella rubella TFs

394 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00097g46 Arthrobotrys oligospora AOL_s00097g46 N 0.000
AGOS_AEL176C Ashbya gossypii AGOS_AEL176C N 0.000
Bcin10g04400 Botrytis cinerea Bcin10g04400 N 0.000
CaO19.14163 Candida albicans CaO19.14163 N 0.000
CaO19.6874 Candida albicans CaO19.6874 N 0.000
PGUG_01009 Candida guilliermondii PGUG_01009 N 0.000
CLUG_00032 Candida lusitaniae CLUG_00032 N 0.000
G210_1739 Candida maltosa G210_1739 N 0.000
CORT_0A09010 Candida orthopsilosis CORT_0A09010 N 0.000
CPAG_01194 Candida parapsilosis CPAG_01194 N 0.000
CTRG_01548 Candida tropicalis CTRG_01548 N 0.000
CLUG_00032 Clavispora lusitaniae CLUG_00032 N 0.000
W97_02882 Coniosporium apollinis W97_02882 N 0.000
H072_5668 Dactylellina haptotyla H072_5668 N 0.000
DEHA2C15378g Debaryomyces hansenii DEHA2C15378g N 0.000
DRE_02746 Drechslerella stenobrocha DRE_02746 N 0.000
Ecym_6298 Eremothecium cymbalariae Ecym_6298 N 0.000
FFUJ_12231 Fusarium fujikuroi FFUJ_12231 N 0.000
FOXG_04220 Fusarium oxysporum FOXG_04220 N 0.000
FVEG_07339 Fusarium verticillioides FVEG_07339 N 0.000
PAS_chr1-4_0102 Komagataella pastoris PAS_chr1-4_0102 N 0.000
KUCA_T00000069001 Kuraishia capsulata KUCA_T00000069001 N 0.000
LELG_00993 Lodderomyces elongisporus LELG_00993 N 0.000
PGUG_01009 Meyerozyma guilliermondii PGUG_01009 N 0.000
GNLVRS01_PISO0L20779g Millerozyma farinosa GNLVRS01_PISO0L20779g N 0.000
GNLVRS01_PISO0K20778g Millerozyma farinosa GNLVRS01_PISO0K20778g N 0.000
HPODL_00192 Ogataea parapolymorpha HPODL_00192 N 0.000
OIDMADRAFT_141697 Oidiodendron maius OIDMADRAFT_141697 N 0.000
JL09_g2845 Pichia kudriavzevii JL09_g2845 N 0.000
XP_002490213.1 Pichia pastoris XP_002490213.1 N 0.000
estExt_fgenesh1_pg.C_chr_4.10127 Pichia stipitis estExt_fgenesh1_pg.C_chr_4.10127 N 0.000
AACERI_AaceriAEL176C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL176C N 0.000
PICST_67483 Scheffersomyces stipitis PICST_67483 N 0.000
SBOR_10075 Sclerotinia borealis SBOR_10075 N 0.000
SS1G_12488 Sclerotinia sclerotiorum SS1G_12488 N 0.000
SPAPADRAFT_71207 Spathaspora passalidarum SPAPADRAFT_71207 N 0.000