evm.TU.supercontig_14.188 (Carica papaya)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 evm.TU.supercontig_14.188 T344813_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.960 0.437
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.936 0.392
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.934 0.386
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.908 0.373
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.908 0.373
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.906 0.361
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.906 0.361
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.887 0.367
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.877 0.323
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.877 0.323
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.877 0.323
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.876 0.310
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.874 0.316
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.874 0.316
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.851 0.335
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.851 0.335
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_14.188 TCP 48 222

Links

Other TCP family TFs
Other Carica papaya TFs

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_008210 Acremonium chrysogenum ACRE_008210 N
F775_22367 Aegilops tauschii F775_22367 N
ANCCAN_16550 Ancylostoma caninum ANCCAN_16550 N
ACOM023832 Anopheles coluzzii ACOM023832 N
BOTBODRAFT_174219 Botryobasidium botryosum BOTBODRAFT_174219 N
BOTBODRAFT_182015 Botryobasidium botryosum BOTBODRAFT_182015 N
Bo4g012540 Brassica oleracea Bo4g012540 N
Bra015737 Brassica rapa Bra015737 N
ENSCJAG00000034027 Callithrix jacchus ENSCJAG00000034027 N
Aan_R005479 Calypte anna Aan_R005479 N
Cflo_11029--XP_001120115.1_APIME Camponotus floridanus Cflo_11029--XP_001120115.1_APIME N
CapteG108943 Capitella teleta CapteG108943 N
evm.TU.supercontig_70.18 Carica papaya evm.TU.supercontig_70.18 N
GG.C169_S05_00378 Chlorella vulgaris GG.C169_S05_00378 N
ENSCSAVG00000005880 Ciona savignyi ENSCSAVG00000005880 N
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I
Genemark1.2983_g Coccomyxa subellipsoidea C169 Genemark1.2983_g N
YQE_11989 Dendroctonus ponderosae YQE_11989 N
GL12242 Drosophila persimilis FBgn0149849 N
GD20218 Drosophila simulans FBgn0191696 N
GK21672 Drosophila willistoni FBgn0223657 N
gene11760-v1.0-hybrid Fragaria vesca gene11760-v1.0-hybrid N
Gfo_R015467 Geospiza fortis Gfo_R015467 N
HCOI00647600 Haemonchus contortus HCOI00647600 N
HHAL003716-PA Halyomorpha halys HHAL003716-PA N
Hsal_11763--XP_001120115.1_APIME Harpegnathos saltator Hsal_11763--XP_001120115.1_APIME N
HPBE_0000220801 Heligmosomoides bakeri HPBE_0000220801 N
Genemark.397_g Heterobasidion annosum Genemark.397_g N
MLOC_7381 Hordeum vulgare MLOC_7381 N
MESCA003685 Megaselia scalaris MESCA003685 N
MCINX010724 Melitaea cinxia MCINX010724 N
ARID5A Microcebus murinus ENSMICG00000001964 I
e_gw1.8.356.1 Monosiga brevicollis e_gw1.8.356.1 N
Myotis_brandtii_ARID2_10029491 Myotis brandtii Myotis_brandtii_ARID2_10029491 N
NECAME_01264 Necator americanus NECAME_01264 N
NBR_0000433801 Nippostrongylus brasiliensis NBR_0000433801 N
OESDEN_17751 Oesophagostomum dentatum OESDEN_17751 N
OFLC_0000209301 Onchocerca flexuosa OFLC_0000209301 N
ORGLA07G0233500 Oryza glaberrima ORGLA07G0233500 N
OS06G0622300 Oryza sativa OS06G0622300 I
Pavir.Da00612 Panicum virgatum Pavir.Da00612 N
Pavir.J25952 Panicum virgatum Pavir.J25952 N
PHUM027610 Pediculus humanus PHUM027610 N
PHACADRAFT_251691 Phanerochaete carnosa PHACADRAFT_251691 N
PDK_20s1315202g001 Phoenix dactylifera PDK_20s1315202g001 N
Sjc_0111140 Schistosoma japonicum Sjc_0111140 N
SMTD_0000131801 Schistosoma mattheei SMTD_0000131801 N
SMTD_0001549501 Schistosoma mattheei SMTD_0001549501 N
SROB_0001561301 Schistosoma rodhaini SROB_0001561301 N
SBAD_0000429301 Soboliphyme baturini SBAD_0000429301 N
PGSC0003DMG400047019 Solanum tuberosum PGSC0003DMG400047019 N
ARID5A Sorex araneus ENSSARG00000003004 I
SPER_0003827801 Spirometra erinaceieuropaei SPER_0003827801 N
SPER_0000246801 Spirometra erinaceieuropaei SPER_0000246801 N
SPER_0003392901 Spirometra erinaceieuropaei SPER_0003392901 N
SPU_003500 Strongylocentrotus purpuratus SPU_003500 N
SPU_009801 Strongylocentrotus purpuratus SPU_009801 N
SVUK_0000804601 Strongylus vulgaris SVUK_0000804601 N
TELCIR_22728 Teladorsagia circumcincta TELCIR_22728 N
TRE_0000846701 Trichobilharzia regenti TRE_0000846701 N
Traes_2AS_40ED2C7BC Triticum aestivum Traes_2AS_40ED2C7BC N
TRIUR3_29596 Triticum urartu TRIUR3_29596 N
ARID5B Tursiops truncatus ENSTTRG00000009968 N
gw1.8.90.1 Volvox carteri gw1.8.90.1 N