evm.TU.supercontig_1815.2 (Carica papaya)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 evm.TU.supercontig_1815.2 T344816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.949 0.504
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.949 0.504
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.949 0.504
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.949 0.504
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.947 0.564
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.943 0.474
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.942 0.466
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.937 0.474
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.928 0.406
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.928 0.406
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.925 0.346
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.925 0.346
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.925 0.338
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.923 0.331
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.923 0.346
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.923 0.346
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.923 0.346
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.923 0.338
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.923 0.338
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.922 0.331
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.921 0.331
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.921 0.323
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.919 0.353
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.919 0.338
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.918 0.338
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.918 0.338
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.917 0.368
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.917 0.353
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.915 0.323
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.915 0.323
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.915 0.323
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.915 0.323
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.913 0.331
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.853 0.353
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.853 0.353
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_1815.2 TCP 1 147

Links

Other TCP family TFs
Other Carica papaya TFs

635 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_045_00179 Aquilegia coerulea Aquca_045_00179 N
APTX Arabidopsis lyrata fgenesh2_kg.6__80__AT5G01310.1 N
AT5G01305 Arabidopsis thaliana AT5G01305 N
Bostr.6251s0101 Boechera stricta Bostr.6251s0101 N
BRADI2G54030 Brachypodium distachyon BRADI2G54030 N
Bo2g001330 Brassica oleracea Bo2g001330 N
Bra028895 Brassica rapa Bra028895 N
Cagra.4082s0011 Capsella grandiflora Cagra.4082s0011 N
evm.TU.supercontig_120.27 Carica papaya evm.TU.supercontig_120.27 N
Ca_09396 Cicer arietinum Ca_09396 N
Cla018363 Citrullus lanatus Cla018363 N
Cucsa.130030 Cucumis sativus Cucsa.130030 N
Thhalv10012562m.g Eutrema salsugineum Thhalv10012562m.g N
gene13480-v1.0-hybrid Fragaria vesca gene13480-v1.0-hybrid N
GLYMA07G18651 Glycine max GLYMA07G18651 N
GLYMA0732S00200 Glycine max GLYMA0732S00200 N
GLYMA03G06792 Glycine max GLYMA03G06792 N
GLYMA01G30660 Glycine max GLYMA01G30660 N
Gorai.012G117300 Gossypium raimondii Gorai.012G117300 N
MLOC_54157 Hordeum vulgare MLOC_54157 N
LPERR01G31030 Leersia perrieri LPERR01G31030 N
Lus10003386.g Linum usitatissimum Lus10003386.g N
Lus10002213.g Linum usitatissimum Lus10002213.g N
LjSGA_012662.1 Lotus japonicus LjSGA_012662.1 N
MDP0000436338 Malus domestica MDP0000436338 N
MDP0000178778 Malus domestica MDP0000178778 N
cassava41569.m1 Manihot esculenta cassava41569.m1 N
MTR_7g069590 Medicago truncatula MTR_7g069590 N
GSMUA_Achr4G18820_001 Musa acuminata GSMUA_Achr4G18820_001 N
OBART01G36050 Oryza barthii OBART01G36050 N
ORGLA01G0299600 Oryza glaberrima ORGLA01G0299600 N
ORGLA06G0253200 Oryza glaberrima ORGLA06G0253200 N
OGLUM01G39950 Oryza glumaepatula OGLUM01G39950 N
OMERI01G33130 Oryza meridionalis OMERI01G33130 N
ONIVA01G41030 Oryza nivara ONIVA01G41030 N
OPUNC01G34850 Oryza punctata OPUNC01G34850 N
ORUFI01G39410 Oryza rufipogon ORUFI01G39410 N
LAX Oryza sativa OS01G0831000 N
Pavir.Ea03297 Panicum virgatum Pavir.Ea03297 N
Pavir.J06869 Panicum virgatum Pavir.J06869 N
POPTR_0006s10350 Populus trichocarpa POPTR_0006s10350 N
POPTR_0016s12830 Populus trichocarpa POPTR_0016s12830 N
Pm002868 Prunus mume Pm002868 N
PRUPE_ppa025490mg Prunus persica PRUPE_ppa025490mg N
SapurV1A.0001s0420 Salix purpurea SapurV1A.0001s0420 N
SapurV1A.0905s0090 Salix purpurea SapurV1A.0905s0090 N
Si004520m.g Setaria italica Si004520m.g N
Solyc09g005070.1 Solanum lycopersicum Solyc09g005070.1 N
Sb03g038820 Sorghum bicolor Sb03g038820 N
TCM_021641 Theobroma cacao TCM_021641 N
TRAES3BF030600030CFD_g Triticum aestivum TRAES3BF030600030CFD_g N
TRAES3BF030500010CFD_g Triticum aestivum TRAES3BF030500010CFD_g N
Traes_3B_D6EA106A51 Triticum aestivum Traes_3B_D6EA106A51 N
VIT_08s0058g00110 Vitis vinifera VIT_08s0058g00110 N
GRMZM2G397518 Zea mays GRMZM2G397518 N