gene27171-v1.0-hybrid (Fragaria vesca)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 gene27171-v1.0-hybrid T344844_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.947 0.420
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.947 0.420
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.941 0.395
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.941 0.395
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.941 0.395
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.938 0.420
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.882 0.318
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.880 0.338
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.880 0.338
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.851 0.293
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.851 0.293
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.846 0.280
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.834 0.306
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.834 0.306
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna27171.1-v1.0-hybrid TCP 159 417

Links

Other TCP family TFs
Other Fragaria vesca TFs

396 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG000360.1 Alligator sinensis Alligator_sinensis_CCG000360.1 N 0.000
ENSAPLG00000008246 Anas platyrhynchos ENSAPLG00000008246 N 0.000
TCF15 Anolis carolinensis ENSACAG00000011172 N 0.000
SCX Anolis carolinensis ENSACAG00000012688 N 0.000
ENSAMXG00000001669 Astyanax mexicanus ENSAMXG00000001669 N 0.000
ENSAMXG00000002921 Astyanax mexicanus ENSAMXG00000002921 N 0.000
ENSAMXG00000012951 Astyanax mexicanus ENSAMXG00000012951 N 0.000
ENSP00000246080-D1 Bos grunniens ENSP00000246080-D1 N 0.000
TCF15 Bos taurus ENSBTAG00000005750 N 0.000
SCX Bos taurus ENSBTAG00000009816 N 0.000
TCF15 Callithrix jacchus ENSCJAG00000020866 N 0.000
Cflo_09545--XP_001122634.1_APIME Camponotus floridanus Cflo_09545--XP_001122634.1_APIME N 0.000
TCF15 Canis familiaris ENSCAFG00000006930 N 0.000
SCX Cavia porcellus ENSCPOG00000022112 N 0.000
Cmyd_10002800 Chelonia mydas Cmyd_10002800 N 0.000
Cmyd_10009563 Chelonia mydas Cmyd_10009563 N 0.000
ENSCSAG00000008646 Chlorocebus sabaeus ENSCSAG00000008646 N 0.000
ENSCSAG00000010467 Chlorocebus sabaeus ENSCSAG00000010467 N 0.000
CLEC008013 Cimex lectularius CLEC008013 N 0.000
scxb Danio rerio ENSDARG00000011635 N 0.000
scxa Danio rerio ENSDARG00000035695 N 0.000
TCF15 Danio rerio ENSDARG00000042857 N 0.000
tcf15 Danio rerio ENSDARG00000067544 N 0.000
TCF15 Dasypus novemcinctus ENSDNOG00000045300 N 0.000
YQE_10857 Dendroctonus ponderosae YQE_10857 N 0.000
ENSDORG00000013778 Dipodomys ordii ENSDORG00000013778 N 0.000
TCF15 Echinops telfairi ENSETEG00000009717 N 0.000
TCF15 Equus caballus ENSECAG00000002411 N 0.000
TCF15 Erinaceus europaeus ENSEEUG00000007767 N 0.000
SCX Felis catus ENSFCAG00000026245 N 0.000
ENSFALG00000000366 Ficedula albicollis ENSFALG00000000366 N 0.000
ENSFALG00000005713 Ficedula albicollis ENSFALG00000005713 N 0.000
ENSGMOG00000015981 Gadus morhua ENSGMOG00000015981 N 0.000
ENSGMOG00000017351 Gadus morhua ENSGMOG00000017351 N 0.000
TCF15 Gallus gallus ENSGALG00000026276 N 0.000
scxa Gasterosteus aculeatus ENSGACG00000005863 N 0.000
TCF15 Gasterosteus aculeatus ENSGACG00000011390 N 0.000
tcf15 Gasterosteus aculeatus ENSGACG00000011799 N 0.000
Gfo_R005304 Geospiza fortis Gfo_R005304 N 0.000
TCF15 Gorilla gorilla ENSGGOG00000015133 N 0.000
TCF15 Homo sapiens ENSG00000125878 N 0.000
SCX Homo sapiens ENSG00000260428 N 0.000
ENSLACG00000000721 Latimeria chalumnae ENSLACG00000000721 N 0.000
ENSLACG00000001591 Latimeria chalumnae ENSLACG00000001591 N 0.000
ENSLACG00000014122 Latimeria chalumnae ENSLACG00000014122 N 0.000
ENSLOCG00000001058 Lepisosteus oculatus ENSLOCG00000001058 N 0.000
ENSLOCG00000002219 Lepisosteus oculatus ENSLOCG00000002219 N 0.000
ENSLOCG00000007444 Lepisosteus oculatus ENSLOCG00000007444 N 0.000
TCF15 Loxodonta africana ENSLAFG00000001884 N 0.000
TCF15 Macaca mulatta ENSMMUG00000022546 N 0.000
ENSMEUG00000000468 Macropus eugenii ENSMEUG00000000468 N 0.000
TCF15 Meleagris gallopavo ENSMGAG00000007877 N 0.000
TCF15 Microcebus murinus ENSMICG00000004647 N 0.000
TCF15 Monodelphis domestica ENSMODG00000019526 N 0.000
Scx Mus musculus ENSMUSG00000034161 N 0.000
Tcf15 Mus musculus ENSMUSG00000068079 N 0.000
TCF15 Myotis lucifugus ENSMLUG00000014021 N 0.000
NV13064 Nasonia vitripennis NV13064 N 0.000
ENSNLEG00000009426 Nomascus leucogenys ENSNLEG00000009426 N 0.000
TCF15 Ochotona princeps ENSOPRG00000005163 N 0.000
Ogr05722 Ophisaurus gracilis Ogr05722 N 0.000
Ogr14597 Ophisaurus gracilis Ogr14597 N 0.000
ENSONIG00000003151 Oreochromis niloticus ENSONIG00000003151 N 0.000
ENSONIG00000007265 Oreochromis niloticus ENSONIG00000007265 N 0.000
ENSONIG00000012261 Oreochromis niloticus ENSONIG00000012261 N 0.000
ENSONIG00000016756 Oreochromis niloticus ENSONIG00000016756 N 0.000
TCF15 Oryctolagus cuniculus ENSOCUG00000000528 N 0.000
scxa Oryzias latipes ENSORLG00000006041 N 0.000
tcf15 Oryzias latipes ENSORLG00000015082 N 0.000
TCF15 Otolemur garnettii ENSOGAG00000015444 N 0.000
SCX Otolemur garnettii ENSOGAG00000028494 N 0.000
ENSOARG00000019015 Ovis aries ENSOARG00000019015 N 0.000
ENSPANG00000013449 Papio anubis ENSPANG00000013449 N 0.000
ENSPANG00000017828 Papio anubis ENSPANG00000017828 N 0.000
ENSPFOG00000005929 Poecilia formosa ENSPFOG00000005929 N 0.000
ENSPFOG00000007762 Poecilia formosa ENSPFOG00000007762 N 0.000
ENSPFOG00000018890 Poecilia formosa ENSPFOG00000018890 N 0.000
Pvit_17687 Pogona vitticeps Pvit_17687 N 0.000
Pvit_18729 Pogona vitticeps Pvit_18729 N 0.000
ENSPPYG00000018968 Pongo abelii ENSPPYG00000018968 N 0.000
SCX Pteropus vampyrus ENSPVAG00000009266 N 0.000
TCF15 Pteropus vampyrus ENSPVAG00000012767 N 0.000
Tcf15 Rattus norvegicus ENSRNOG00000000012 N 0.000
Scx Rattus norvegicus ENSRNOG00000021812 N 0.000
ENSSHAG00000007757 Sarcophilus harrisii ENSSHAG00000007757 N 0.000
ENSSSCG00000007202 Sus scrofa ENSSSCG00000007202 N 0.000
TCF15 Taeniopygia guttata ENSTGUG00000006794 N 0.000
ENSTRUG00000005875 Takifugu rubripes ENSTRUG00000005875 N 0.000
tcf15 Takifugu rubripes ENSTRUG00000007678 N 0.000
scxa Takifugu rubripes ENSTRUG00000017355 N 0.000
tcf15 Tetraodon nigroviridis ENSTNIG00000012471 N 0.000
scxa Tetraodon nigroviridis ENSTNIG00000019087 N 0.000
TC015754 Tribolium castaneum TC015754 N 0.000
SCX Tursiops truncatus ENSTTRG00000006425 N 0.000
TCF15 Tursiops truncatus ENSTTRG00000007058 N 0.000
tcf15.L Xenopus laevis XB-GENE-6252545 N 0.000
tcf15 Xenopus tropicalis XB-GENE-488935 N 0.000
scx Xenopus tropicalis XB-GENE-939816 N 0.000
XP_002937913 Xenopus tropicalis XP_002937913 N 0.000
ENSXMAG00000008863 Xiphophorus maculatus ENSXMAG00000008863 N 0.000
ENSXMAG00000011591 Xiphophorus maculatus ENSXMAG00000011591 N 0.000