Gorai.009G373000 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.009G373000 T344873_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.960 0.608
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.957 0.600
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.957 0.542
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.957 0.542
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.957 0.542
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.939 0.525
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.901 0.425
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.888 0.425
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.887 0.417
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.866 0.400
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.853 0.375
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.851 0.417
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.851 0.417
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.844 0.358
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G373000.1 TCP 36 244

Links

Other TCP family TFs
Other Gossypium raimondii TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018337 Ailuropoda melanoleuca ENSAMEG00000018337 I
ENSAPLG00000011380 Anas platyrhynchos ENSAPLG00000011380 I
JDP2 Anolis carolinensis ENSACAG00000016944 I
Afo_R004508 Aptenodytes forsteri Afo_R004508 I
ENSAMXG00000014502 Astyanax mexicanus ENSAMXG00000014502 I
ENSP00000267569-D1 Bos grunniens ENSP00000267569-D1 I
JDP2 Bos taurus ENSBTAG00000009451 I
JDP2 Callithrix jacchus ENSCJAG00000020645 I
Aan_R005677 Calypte anna Aan_R005677 I
JDP2 Canis familiaris ENSCAFG00000017042 I
ENSCPOG00000006636 Cavia porcellus ENSCPOG00000006636 I
ENSCSAG00000012122 Chlorocebus sabaeus ENSCSAG00000012122 I
jdp2a Danio rerio ENSDARG00000040137 I
JDP2 Dasypus novemcinctus ENSDNOG00000033141 I
ENSDORG00000012888 Dipodomys ordii ENSDORG00000012888 I
JDP2 Equus caballus ENSECAG00000014862 I
JDP2 Felis catus ENSFCAG00000029464 I
ENSFALG00000006358 Ficedula albicollis ENSFALG00000006358 I
JDP2 Gallus gallus ENSGALG00000010322 I
Gfo_R012906 Geospiza fortis Gfo_R012906 I
JDP2 Gorilla gorilla ENSGGOG00000010752 I
JDP2 Homo sapiens ENSG00000140044 D
ENSSTOG00000026831 Ictidomys tridecemlineatus ENSSTOG00000026831 I
ENSLACG00000018083 Latimeria chalumnae ENSLACG00000018083 I
ENSLOCG00000010526 Lepisosteus oculatus ENSLOCG00000010526 I
JDP2 Loxodonta africana ENSLAFG00000025757 I
ENSMMUP00000003747 Macaca fascicularis ENSMMUP00000003747 I
ENSMEUG00000011212 Macropus eugenii ENSMEUG00000011212 I
JDP2 Meleagris gallopavo ENSMGAG00000012755 I
ENSMICG00000016031 Microcebus murinus ENSMICG00000016031 I
JDP2 Monodelphis domestica ENSMODG00000005909 I
ENSMPUG00000009147 Mustela putorius furo ENSMPUG00000009147 I
Jdp2 Mus musculus ENSMUSG00000034271 D
Myotis_brandtii_JDP2_10012947 Myotis brandtii Myotis_brandtii_JDP2_10012947 I
ENSMLUG00000026577 Myotis lucifugus ENSMLUG00000026577 I
ENSMLUG00000002256 Myotis lucifugus ENSMLUG00000002256 I
ENSMLUG00000026078 Myotis lucifugus ENSMLUG00000026078 I
ENSNLEG00000016475 Nomascus leucogenys ENSNLEG00000016475 I
JDP2 Ochotona princeps ENSOPRG00000012032 I
Ogr08030 Ophisaurus gracilis Ogr08030 I
JDP2 Oryctolagus cuniculus ENSOCUG00000008466 I
JDP2 Otolemur garnettii ENSOGAG00000024796 I
ENSOARG00000001796 Ovis aries ENSOARG00000001796 I
JDP2 Pan troglodytes ENSPTRG00000006555 I
ENSPANG00000019986 Papio anubis ENSPANG00000019986 I
ENSPSIG00000017647 Pelodiscus sinensis ENSPSIG00000017647 I
Pvit_01216 Pogona vitticeps Pvit_01216 I
ENSPPYG00000006004 Pongo abelii ENSPPYG00000006004 I
JDP2 Pteropus vampyrus ENSPVAG00000000672 I
Jdp2 Rattus norvegicus ENSRNOG00000008224 D
ENSSHAG00000017391 Sarcophilus harrisii ENSSHAG00000017391 I
JDP2 Taeniopygia guttata ENSTGUG00000012219 I
ENSTBEG00000014483 Tupaia belangeri ENSTBEG00000014483 I