CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Lus10034679.g *(Linum usitatissimum)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Lus10034679.g	T344901_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP5 M02510_2.00	Arabidopsis lyrata	GGGACCAC	GTGGTCCC	PBM Weirauch et al.(2014) pTH9233	0.949	0.538
TCP5 M02505_2.00	Arabidopsis thaliana	GGGACCAY	RTGGTCCC	PBM Weirauch et al.(2014) pTH7523	0.948	0.547
PK10344.1 M01313_2.00	Cannabis sativa	GGGACCAC	GTGGTCCC	PBM Lambert et al.(2019) pTH11464	0.939	0.496
TCP17 M07290_2.00	Arabidopsis thaliana	GTGGGGACCAC	GTGGTCCCCAC	Dap-seq OMalley et al.(2016) TCP17_col_a	0.911	0.496
TCP17 M07291_2.00	Arabidopsis thaliana	RTGGGGACCAC	GTGGTCCCCAY	Dap-seq OMalley et al.(2016) TCP17_colamp_a	0.911	0.496
OS01G0213800 M11398_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF5_01	0.890	0.436
TCP13 M07283_2.00	Arabidopsis thaliana	GTGGGGACCACWD	HWGTGGTCCCCAC	Dap-seq OMalley et al.(2016) PTF1_col_a	0.890	0.436
TCP13 M07284_2.00	Arabidopsis thaliana	NNBGGGACCACHN	NDGTGGTCCCVNN	Dap-seq OMalley et al.(2016) PTF1_colamp_a	0.890	0.436
LjT20A21.20.nc M02519_2.00	Lotus japonicus	GGGACCAY	RTGGTCCC	PBM Weirauch et al.(2014) pTH9202	0.882	0.402
TCP4 M02501_2.00	Arabidopsis thaliana	GGGACCAC	GTGGTCCC	PBM Weirauch et al.(2014) pTH8084	0.868	0.402
TCP4 M02514_2.00	Arabidopsis lyrata	BKGGGACCAC	GTGGTCCCMV	PBM Weirauch et al.(2014) pTH9313	0.860	0.385
TCP2 M02503_2.00	Arabidopsis thaliana	NBGGKMCCVN	NBGGKMCCVN	PBM Weirauch et al.(2014) pTH8198	0.856	0.385
TCP2 M02508_2.00	Arabidopsis lyrata	GGSMCCAC	GTGGKSCC	PBM Weirauch et al.(2014) pTH9231	0.856	0.385
TCP3 M02500_2.00	Arabidopsis thaliana	NDGGMCCACN	NGTGGKCCHN	PBM Weirauch et al.(2014) pTH8835	0.855	0.402
TCP3 M07274_2.00	Arabidopsis thaliana	DHNGGGACCACH	DGTGGTCCCNDH	Dap-seq OMalley et al.(2016) TCP3_colamp_a	0.855	0.402
TCP3 M07275_2.00	Arabidopsis thaliana	DNBGGGACCACHN	NDGTGGTCCCVNH	Dap-seq OMalley et al.(2016) TCP3_col	0.855	0.402
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Lus10034679	TCP	82	341	FGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLIENTSDDIDKLPPLQLPHSFGFEAASGGGGHLHQYYNSSLAHMAPFFDFGRPGTSTSTNTSASSSSGTSGLFDQQHLNSLYQWGDHHHNQNHYQNQLPILGLGNNYGHDHNHVSSSSGGSGGGGANFFLPSSYLALSNNTTNSASTSTTNSPHDQPTTMLMPPPPQPYSAYNNQLEMMSDNHHQNYQRQQQQLHFQNATTTRPTPHFPFN

Links
Other TCP family TFs
Other *Linum usitatissimum* TFs

430 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CpipJ_CPIJ001651	Culex pipiens	CpipJ_CPIJ001651	N

Lus10034679.g (Linum usitatissimum) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

430 Related TFs

Lus10034679.g **(Linum usitatissimum)
TCP**