MDP0000442611 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000442611 T344948_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.956 0.442
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.954 0.435
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.950 0.396
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.950 0.396
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.950 0.396
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.939 0.403
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.898 0.325
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.895 0.338
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.885 0.325
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.861 0.364
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.854 0.292
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.853 0.286
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.843 0.318
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.843 0.318
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000442611 TCP 22 260

Links

Other TCP family TFs
Other Malus domestica TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AEL176C Ashbya gossypii AGOS_AEL176C N
PGUG_01009 Candida guilliermondii PGUG_01009 N
A1O1_04095 Capronia coronata A1O1_04095 N
A1O3_01321 Capronia epimyces A1O3_01321 N
PV04_06122 Capronia semiimmersa PV04_06122 N
PV07_03969 Cladophialophora immunda PV07_03969 N
Ecym_6298 Eremothecium cymbalariae Ecym_6298 N
HMPREF1120_08485 Exophiala dermatitidis HMPREF1120_08485 N
Z517_00692 Fonsecaea pedrosoi Z517_00692 N
NechaG50578 Fusarium solani NechaG50578 N
KLTH0H10494g Kluyveromyces thermotolerans KLTH0H10494g N
Kwal_2526 Kluyveromyces waltii Kwal_2526 N
KLTH0H10494g Lachancea thermotolerans KLTH0H10494g N
PGUG_01009 Meyerozyma guilliermondii PGUG_01009 N
e_gw1.14.618.1 Nectria haematococca e_gw1.14.618.1 N
AACERI_AaceriAEL176C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL176C N
YALI0_D21230g Yarrowia lipolytica YALI0_D21230g N