CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr4.LjB15O07.110.nc
(
Lotus japonicus
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
chr4.LjB15O07.110.nc
T345123_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.834
0.379
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr4.LjB15O07.110.nc
TCP
123
271
SSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNLHHPSCSGAKSSSSTSEGEGVSGLDEVVISENQEQEKEQQPIVKRRANKVCRKSAFNAIGREKARERARERTREKLRTKKLAD
Links
Other
TCP
family TFs
Other
Lotus japonicus
TFs
97 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy