LjSGA_018381.1 (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 LjSGA_018381.1 T345130_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.884 0.571
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.884 0.571
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.884 0.571
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.884 0.571
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.882 0.512
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.879 0.571
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.876 0.500
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.872 0.488
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.864 0.571
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.860 0.595
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.860 0.583
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.860 0.571
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.860 0.571
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.860 0.571
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.860 0.571
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.854 0.512
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.854 0.512
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.852 0.536
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.851 0.548
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.851 0.548
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.847 0.560
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.843 0.536
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.840 0.571
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.840 0.512
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.840 0.560
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.839 0.512
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.839 0.512
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.839 0.512
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.839 0.560
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.839 0.512
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.838 0.571
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.834 0.560
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.834 0.560
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.824 0.560
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.824 0.560
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_018381.1 TCP 47 135

Links

Other TCP family TFs
Other Lotus japonicus TFs

585 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI48827 Acyrthosiphon pisum ACYPI48827 I
ENSAMEG00000004435 Ailuropoda melanoleuca ENSAMEG00000004435 I
Alligator_sinensis_CCG020430.1 Alligator sinensis Alligator_sinensis_CCG020430.1 I
Aqu1.224085 Amphimedon queenslandica Aqu1.224085 I
ENSAPLG00000002694 Anas platyrhynchos ENSAPLG00000002694 I
NFYA Anolis carolinensis ENSACAG00000016527 I
AARA007990 Anopheles arabiensis AARA007990 I
ACHR000726 Anopheles christyi ACHR000726 I
ACOM025626 Anopheles coluzzii ACOM025626 I
ADAC005077 Anopheles darlingi ADAC005077 I
AFUN002061 Anopheles funestus AFUN002061 I
AMEC004928 Anopheles melas AMEC004928 I
AMEM003440 Anopheles merus AMEM003440 I
AQUA004503 Anopheles quadriannulatus AQUA004503 I
ASTEI01331 Anopheles stephensi ASTEI01331 I
GB50732 Apis mellifera GB50732 I
Afo_R002068 Aptenodytes forsteri Afo_R002068 I
ENSAMXG00000002532 Astyanax mexicanus ENSAMXG00000002532 I
ACEP21720 Atta cephalotes ACEP21720 I
ENSP00000345702-D2 Bos grunniens ENSP00000345702-D2 I
NFYA Bos taurus ENSBTAG00000009905 I
Brh_R001483 Buceros rhinoceros Brh_R001483 I
NFYA Callithrix jacchus ENSCJAG00000004074 I
Aan_R003793 Calypte anna Aan_R003793 I
Cflo_01621--XP_001121566.1_APIME Camponotus floridanus Cflo_01621--XP_001121566.1_APIME I
NFYA Canis familiaris ENSCAFG00000001580 I
NFYA Cavia porcellus ENSCPOG00000011146 I
Cmyd_10011198 Chelonia mydas Cmyd_10011198 I
ENSCSAG00000011196 Chlorocebus sabaeus ENSCSAG00000011196 I
CLEC007231 Cimex lectularius CLEC007231 I
CGI_10012001 Crassostrea gigas CGI_10012001 I
CpipJ_CPIJ010764 Culex pipiens CpipJ_CPIJ010764 I
CpipJ_CPIJ017497 Culex pipiens CpipJ_CPIJ017497 I
CPIJ010764 Culex quinquefasciatus CPIJ010764 I
CPIJ017497 Culex quinquefasciatus CPIJ017497 I
nfyal Danio rerio ENSDARG00000001621 I
nfya Danio rerio ENSDARG00000042004 I
NFYA Dasypus novemcinctus ENSDNOG00000039692 I
YQE_10237 Dendroctonus ponderosae YQE_10237 I
Nfya Dipodomys ordii ENSDORG00000006450 I
ENSETEG00000000629 Echinops telfairi ENSETEG00000000629 I
NFYA Equus caballus ENSECAG00000007952 I
ENSEEUG00000006487 Erinaceus europaeus ENSEEUG00000006487 I
NFYA Felis catus ENSFCAG00000027813 I
ENSFALG00000002949 Ficedula albicollis ENSFALG00000002949 I
ENSGMOG00000001226 Gadus morhua ENSGMOG00000001226 I
NFYA Gallus gallus ENSGALG00000003247 I
nfyal Gasterosteus aculeatus ENSGACG00000007867 I
NFYA Gorilla gorilla ENSGGOG00000008485 I
HHAL009455-PA Halyomorpha halys HHAL009455-PA I
Hsal_09569--XP_001121566.1_APIME Harpegnathos saltator Hsal_09569--XP_001121566.1_APIME I
NFYA Homo sapiens ENSG00000001167 D
ENSSTOG00000023405 Ictidomys tridecemlineatus ENSSTOG00000023405 I
ENSLACG00000015334 Latimeria chalumnae ENSLACG00000015334 I
ENSLOCG00000012292 Lepisosteus oculatus ENSLOCG00000012292 I
LDEC000161 Leptinotarsa decemlineata LDEC000161 I
NFYA Loxodonta africana ENSLAFG00000016570 I
ENSP00000345702 Macaca fascicularis ENSP00000345702 I
NFYA Macaca mulatta ENSMMUG00000021173 I
ENSMEUG00000005917 Macropus eugenii ENSMEUG00000005917 I
NFYA Meleagris gallopavo ENSMGAG00000010140 I
NFYA Microcebus murinus ENSMICG00000009686 I
NFYA Monodelphis domestica ENSMODG00000013084 I
ENSMPUG00000013686 Mustela putorius furo ENSMPUG00000013686 I
Nfya Mus musculus ENSMUSG00000023994 D
NFYA Myotis lucifugus ENSMLUG00000008253 I
NV16776 Nasonia vitripennis NV16776 I
ENSNLEG00000005028 Nomascus leucogenys ENSNLEG00000005028 I
NFYA Ornithorhynchus anatinus ENSOANG00000011990 I
NFYA Oryctolagus cuniculus ENSOCUG00000016869 I
nfyal Oryzias latipes ENSORLG00000006088 I
NFYA Otolemur garnettii ENSOGAG00000002636 I
ENSOARG00000000894 Ovis aries ENSOARG00000000894 I
NFYA Pan troglodytes ENSPTRG00000018146 I
ENSPANG00000009714 Papio anubis ENSPANG00000009714 I
PHUM011400 Pediculus humanus PHUM011400 I
ENSPSIG00000013239 Pelodiscus sinensis ENSPSIG00000013239 I
ENSPMAG00000000964 Petromyzon marinus ENSPMAG00000000964 I
ENSPFOG00000012890 Poecilia formosa ENSPFOG00000012890 I
Pvit_06013 Pogona vitticeps Pvit_06013 I
ENSPPYG00000016588 Pongo abelii ENSPPYG00000016588 I
NFYA Procavia capensis ENSPCAG00000011508 I
NFYA Pteropus vampyrus ENSPVAG00000008318 I
Nfya Rattus norvegicus ENSRNOG00000012702 I
RPRC000951 Rhodnius prolixus RPRC000951 I
Sakowv30001860m.g Saccoglossus kowalevskii Sakowv30001860m.g I
ENSSHAG00000017808 Sarcophilus harrisii ENSSHAG00000017808 I
SINV17788 Solenopsis invicta SINV17788 I
NFYA Sorex araneus ENSSARG00000009765 I
SPU_025589 Strongylocentrotus purpuratus SPU_025589 I
SPU_025737 Strongylocentrotus purpuratus SPU_025737 I
ENSSSCG00000001600 Sus scrofa ENSSSCG00000001600 I
NFYA Sus scrofa ENSSSCG00000001611 I
ENSSSCG00000022941 Sus scrofa ENSSSCG00000022941 I
NFYA Taeniopygia guttata ENSTGUG00000001832 I
nfyal Takifugu rubripes ENSTRUG00000003925 I
ENSTSYG00000007176 Tarsius syrichta ENSTSYG00000007176 I
nfyal Tetraodon nigroviridis ENSTNIG00000015135 I
TC007453 Tribolium castaneum TC007453 I
NFYA Tursiops truncatus ENSTTRG00000013394 I
Tal_R012767 Tyto alba Tal_R012767 I
NFYA Vicugna pacos ENSVPAG00000008028 I
AAI00179 Xenopus laevis AAI00179 I
nfya.S Xenopus laevis XB-GENE-942013 I
nfya Xenopus tropicalis XB-GENE-942007 I
ENSXMAG00000010069 Xiphophorus maculatus ENSXMAG00000010069 I