MTR_1g086980 (Medicago truncatula)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 MTR_1g086980 T345561_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.225
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.200
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.200
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.200
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.200
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.200
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.200
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.200
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.197
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.197
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.203
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.197
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.203
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.197
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.200
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.197
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.200
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.200
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.200
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.200
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.200
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.200
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.197
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.197
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.197
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.184
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.173
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.187
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES61647 TCR/CxC 619 655
KEH43196 TCR/CxC 599 635
KEH43197 TCR/CxC 547 583
KEH43198 TCR/CxC 609 645
KEH43199 TCR/CxC 419 455
KEH43200 TCR/CxC 609 645
KEH43201 TCR/CxC 609 643
KEH43202 TCR/CxC 609 645
KEH43203 TCR/CxC 547 583
KEH43204 TCR/CxC 568 604

Links

Other TCR/CxC family TFs
Other Medicago truncatula TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G48350 Brachypodium distachyon BRADI1G48350 N
BRADI3G45470 Brachypodium distachyon BRADI3G45470 N
BRADI4G41960 Brachypodium distachyon BRADI4G41960 N
MLOC_13034 Hordeum vulgare MLOC_13034 N
MLOC_43316 Hordeum vulgare MLOC_43316 N
MLOC_62808 Hordeum vulgare MLOC_62808 N
OB12G13670 Oryza brachyantha OB12G13670 N
OB06G14070 Oryza brachyantha OB06G14070 N
OB02G27690 Oryza brachyantha OB02G27690 N
ORGLA12G0035900 Oryza glaberrima ORGLA12G0035900 N
ORGLA06G0040800 Oryza glaberrima ORGLA06G0040800 N
ORGLA02G0172700 Oryza glaberrima ORGLA02G0172700 N
BGIOSGA006277 Oryza indica BGIOSGA006277 N
BGIOSGA037035 Oryza indica BGIOSGA037035 N
BGIOSGA022378 Oryza indica BGIOSGA022378 N
OLONG_000187 Oryza longistaminata OLONG_000187 N
OLONG_002410 Oryza longistaminata OLONG_002410 N
OLONG_014957 Oryza longistaminata OLONG_014957 N
ONIVA02G22250 Oryza nivara ONIVA02G22250 N
ONIVA06G05610 Oryza nivara ONIVA06G05610 N
OS06G0166100 Oryza sativa OS06G0166100 N
OS12G0160900 Oryza sativa OS12G0160900 N
OS02G0550900 Oryza sativa OS02G0550900 N
Pavir.Cb02030 Panicum virgatum Pavir.Cb02030 N
Pavir.Ca00202 Panicum virgatum Pavir.Ca00202 N
Pavir.Bb02863 Panicum virgatum Pavir.Bb02863 N
Pavir.Ba00843 Panicum virgatum Pavir.Ba00843 N
Pavir.Ab01899 Panicum virgatum Pavir.Ab01899 N
Pavir.Aa01718 Panicum virgatum Pavir.Aa01718 N
Si009370m.g Setaria italica Si009370m.g N
Si016477m.g Setaria italica Si016477m.g N
Si029002m.g Setaria italica Si029002m.g N
Sb02g034560 Sorghum bicolor Sb02g034560 N
Sb04g022400 Sorghum bicolor Sb04g022400 N
Sb08g003780 Sorghum bicolor Sb08g003780 N
Traes_5DS_620A46565 Triticum aestivum Traes_5DS_620A46565 N
Traes_7DS_559DD9894 Triticum aestivum Traes_7DS_559DD9894 N
Traes_7DS_016F8E2EA Triticum aestivum Traes_7DS_016F8E2EA N
Traes_7BS_1B525AFF5 Triticum aestivum Traes_7BS_1B525AFF5 N
Traes_5BS_BCC406654 Triticum aestivum Traes_5BS_BCC406654 N
Traes_5AS_385093B54 Triticum aestivum Traes_5AS_385093B54 N
Traes_4AL_8B3A3CC2F Triticum aestivum Traes_4AL_8B3A3CC2F N
TRIUR3_03719 Triticum urartu TRIUR3_03719 N
TRIUR3_25143 Triticum urartu TRIUR3_25143 N
GRMZM2G048987 Zea mays GRMZM2G048987 N
GRMZM2G034868 Zea mays GRMZM2G034868 N
GRMZM2G043250 Zea mays GRMZM2G043250 N