SPU_025306 (Strongylocentrotus purpuratus)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 SPU_025306 T345807_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPU_025306
M02531_2.00		 Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.893
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.867
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.867
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.853
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.853
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.813
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.800
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.680
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.680
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.680
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.680
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.680
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.653
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.587
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.587
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.587
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.587
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.587
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.573
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.573
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.573
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.560
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.560
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.560
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.547
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.547
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.520
For this family, TFs with SR scores > 0.660 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02531_2.00 TCR/CxC 53 89
M02531_2.00 TCR/CxC 127 164

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_025306-tr TCR/CxC 62 98
SPU_025306-tr TCR/CxC 136 173

Links

Other TCR/CxC family TFs
Other Strongylocentrotus purpuratus TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29232 Aegilops tauschii F775_29232 I
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I
BRADI3G50220 Brachypodium distachyon BRADI3G50220 I
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I
PK15571.1 Cannabis sativa PK15571.1 I
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I
Carubv10023896m.g Capsella rubella Carubv10023896m.g I
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I
Ca_04027 Cicer arietinum Ca_04027 I
Cla002451 Citrullus lanatus Cla002451 I
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I
GLYMA07G05800 Glycine max GLYMA07G05800 I
GLYMA06G13890 Glycine max GLYMA06G13890 I
GLYMA04G40960 Glycine max GLYMA04G40960 I
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I
Gorai.007G016800 Gossypium raimondii Gorai.007G016800 I
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I
Gorai.008G128000 Gossypium raimondii Gorai.008G128000 I
Gorai.008G258900 Gossypium raimondii Gorai.008G258900 I
Gorai.003G094500 Gossypium raimondii Gorai.003G094500 I
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I
MLOC_70350 Hordeum vulgare MLOC_70350 I
LPERR04G16440 Leersia perrieri LPERR04G16440 I
Lus10008840.g Linum usitatissimum Lus10008840.g I
Lus10030214.g Linum usitatissimum Lus10030214.g I
Lus10032952.g Linum usitatissimum Lus10032952.g I
cassava39514.m1 Manihot esculenta cassava39514.m1 I
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I
MTR_3g092150 Medicago truncatula MTR_3g092150 I
mgf020022m Mimulus guttatus mgf020022m I
OBART04G20320 Oryza barthii OBART04G20320 I
OB04G27300 Oryza brachyantha OB04G27300 I
ORGLA02G0222500 Oryza glaberrima ORGLA02G0222500 I
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I
OGLUM02G26440 Oryza glumaepatula OGLUM02G26440 I
HOX24 Oryza indica BGIOSGA008720 I
BGIOSGA016852 Oryza indica BGIOSGA016852 I
OMERI02G25450 Oryza meridionalis OMERI02G25450 I
ONIVA04G18550 Oryza nivara ONIVA04G18550 I
ONIVA02G28400 Oryza nivara ONIVA02G28400 I
OPUNC04G17950 Oryza punctata OPUNC04G17950 I
OPUNC02G23740 Oryza punctata OPUNC02G23740 I
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I
ORUFI02G27420 Oryza rufipogon ORUFI02G27420 I
HOX24 Oryza sativa OS02G0649300 I
Pavir.Ab02438 Panicum virgatum Pavir.Ab02438 I
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I
Pavir.J39801 Panicum virgatum Pavir.J39801 I
PDK_20s1318331g001 Phoenix dactylifera PDK_20s1318331g001 I
POPTR_0001s11380 Populus trichocarpa POPTR_0001s11380 I
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I
27964.m000347 Ricinus communis 27964.m000347 I
30089.m001006 Ricinus communis 30089.m001006 I
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I
SapurV1A.0094s0260 Salix purpurea SapurV1A.0094s0260 I
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I
Si018237m.g Setaria italica Si018237m.g I
Si010550m.g Setaria italica Si010550m.g I
Sb06g024000 Sorghum bicolor Sb06g024000 I
Sb04g033380 Sorghum bicolor Sb04g033380 I
TCM_005074 Theobroma cacao TCM_005074 I
TCM_015486 Theobroma cacao TCM_015486 I
TCM_015645 Theobroma cacao TCM_015645 I
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I
VIT_02s0025g02590 Vitis vinifera VIT_02s0025g02590 I
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I
GRMZM2G396527 Zea mays GRMZM2G396527 I
GRMZM2G351330 Zea mays GRMZM2G351330 I
GRMZM2G117164 Zea mays GRMZM2G117164 I