CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HmN_000131900 *(Hymenolepis microstoma)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03638 (TCR)	IPR005172	HmN_000131900	T346279_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.605
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.605
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.592
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.592
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.592
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.579
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.579
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.579
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.553
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.526
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.526
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.526
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.526
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.526
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.526
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.526
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.526
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.526
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.526
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.526
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.526
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.526
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.513
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.513
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.513
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.500
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.474
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.421
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
HmN_000131900	TCR/CxC	328	365	QQICSCSRSKCLKLYCDCFAAGRACGESCNCRHCYNNL
HmN_000131900	TCR/CxC	400	437	VLGCRCKRSHCSKGYCECYLAKIPCNQRCRCLGCSNDE

Links
Other TCR/CxC family TFs
Other *Hymenolepis microstoma* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000010499	Ailuropoda melanoleuca	ENSAMEG00000010499	I	0.000
Alligator_sinensis_CCG008027.1	Alligator sinensis	Alligator_sinensis_CCG008027.1	I	0.000
MAFF	Anolis carolinensis	ENSACAG00000008424	I	0.000
Afo_R007908	Aptenodytes forsteri	Afo_R007908	I	0.000
MAFF	Bos taurus	ENSBTAG00000021435	I	0.000
Brh_R009272	Buceros rhinoceros	Brh_R009272	I	0.000
MAFF	Callithrix jacchus	ENSCJAG00000011992	I	0.000
Aan_R011585	Calypte anna	Aan_R011585	I	0.000
MAFF	Canis familiaris	ENSCAFG00000029842	I	0.000
Cmyd_10007723	Chelonia mydas	Cmyd_10007723	I	0.000
ENSCSAG00000006757	Chlorocebus sabaeus	ENSCSAG00000006757	I	0.000
Maff	Dipodomys ordii	ENSDORG00000013449	I	0.000
MAFF	Echinops telfairi	ENSETEG00000012984	I	0.000
ENSFALG00000012611	Ficedula albicollis	ENSFALG00000012611	I	0.000
ENSGALG00000012277	Gallus gallus	ENSGALG00000012277	I	0.000
mafgb	Gasterosteus aculeatus	ENSGACG00000019041	I	0.000
Gfo_R004700	Geospiza fortis	Gfo_R004700	I	0.000
MAFF	Homo sapiens	ENSG00000185022	D	0.000
ENSSTOG00000025460	Ictidomys tridecemlineatus	ENSSTOG00000025460	I	0.000
ENSLACG00000007109	Latimeria chalumnae	ENSLACG00000007109	I	0.000
MAFF	Loxodonta africana	ENSLAFG00000022547	I	0.000
ENSMMUP00000018288	Macaca fascicularis	ENSMMUP00000018288	I	0.000
ENSMMUG00000013915	Macaca mulatta	ENSMMUG00000013915	I	0.000
ENSMEUG00000002984	Macropus eugenii	ENSMEUG00000002984	I	0.000
MAFF	Meleagris gallopavo	ENSMGAG00000015937	I	0.000
ENSMICG00000011572	Microcebus murinus	ENSMICG00000011572	I	0.000
MAFF	Monodelphis domestica	ENSMODG00000018732	I	0.000
ENSMPUG00000013085	Mustela putorius furo	ENSMPUG00000013085	I	0.000
Maff	Mus musculus	ENSMUSG00000042622	D	0.000
MAFF	Myotis lucifugus	ENSMLUG00000011358	I	0.000
ENSNLEG00000015068	Nomascus leucogenys	ENSNLEG00000015068	I	0.000
Ogr18387	Ophisaurus gracilis	Ogr18387	N	0.000
Ogr11652	Ophisaurus gracilis	Ogr11652	I	0.000
MAFF	Oryctolagus cuniculus	ENSOCUG00000006266	I	0.000
MAFG	Oryzias latipes	ENSORLG00000012170	I	0.000
mafk	Oryzias latipes	ENSORLG00000004687	I	0.000
MAFF	Otolemur garnettii	ENSOGAG00000027848	I	0.000
MAFF	Pan troglodytes	ENSPTRG00000029431	I	0.000
ENSPANG00000020550	Papio anubis	ENSPANG00000020550	I	0.000
ENSPFOG00000002983	Poecilia formosa	ENSPFOG00000002983	I	0.000
ENSPFOG00000012736	Poecilia formosa	ENSPFOG00000012736	I	0.000
Pvit_08359	Pogona vitticeps	Pvit_08359	I	0.000
ENSPPYG00000011816	Pongo abelii	ENSPPYG00000011816	I	0.000
MAFF	Procavia capensis	ENSPCAG00000013370	I	0.000
MAFK	Pteropus vampyrus	ENSPVAG00000013872	I	0.000
Maff	Rattus norvegicus	ENSRNOG00000012886	I	0.000
MAFF	Sus scrofa	ENSSSCG00000030165	I	0.000
MAFF	Taeniopygia guttata	ENSTGUG00000010431	I	0.000
mafk	Takifugu rubripes	ENSTRUG00000013716	I	0.000
mafk	Tetraodon nigroviridis	ENSTNIG00000004471	I	0.000
MAFF	Tursiops truncatus	ENSTTRG00000005618	I	0.000
ENSXMAG00000012964	Xiphophorus maculatus	ENSXMAG00000012964	I	0.000
ENSXMAG00000009331	Xiphophorus maculatus	ENSXMAG00000009331	I	0.000

HmN_000131900 (Hymenolepis microstoma) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

HmN_000131900 **(Hymenolepis microstoma)
TCR/CxC**