CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0015s07530 *(Populus trichocarpa)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	POPTR_0015s07530	T354409_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY6 M07377_2.00	Arabidopsis thaliana	DNNNHNDHNHNRGTCAACG	CGTTGACYNDNDHNDNNNH	Dap-seq OMalley et al.(2016) WRKY6_col_a	0.870	0.864
WRKY6 M07378_2.00	Arabidopsis thaliana	NNHNWRGTCAACKNH	DNMGTTGACYWNDNN	Dap-seq OMalley et al.(2016) WRKY6_colamp_a	0.870	0.864
WRKY47 M00732_2.00	Arabidopsis thaliana	NNRGTCAACKN	NMGTTGACYNN	PBM Chang et al.(2013) pTH7913	0.869	0.881
WRKY47 M07402_2.00	Arabidopsis thaliana	WRGTCAAMGNHVDK	MHBDNCKTTGACYW	Dap-seq OMalley et al.(2016) WRKY47_col_a	0.869	0.881
WRKY47 M07403_2.00	Arabidopsis thaliana	NNNHWRGTCAACKNHNNNN	NNNNDNMGTTGACYWDNNN	Dap-seq OMalley et al.(2016) WRKY47_colamp_a	0.869	0.881
WRKY31 M07408_2.00	Arabidopsis thaliana	NNNNHNNNNNDRGTCAACG	CGTTGACYHNNNNNDNNNN	Dap-seq OMalley et al.(2016) WRKY31_col_a	0.869	0.864
WRKY31 M07409_2.00	Arabidopsis thaliana	NHWRGTCAACKNH	DNMGTTGACYWDN	Dap-seq OMalley et al.(2016) WRKY31_colamp_a	0.869	0.864
WRKY42 M07404_2.00	Arabidopsis thaliana	NDWRGTCAACDNNNNDNNHNN	NNDNNHNNNNHGTTGACYWHN	Dap-seq OMalley et al.(2016) WRKY42_col_a	0.867	0.847
WRKY42 M07405_2.00	Arabidopsis thaliana	HNDNNNWRGTCAACKNHNDD	HHNDNMGTTGACYWNNNHND	Dap-seq OMalley et al.(2016) WRKY42_colamp_a	0.867	0.847
WRKY60 M02551_2.00	Arabidopsis thaliana	NYGGTCAAMNN	NNKTTGACCRN	PBM Weirauch et al.(2014) pTH7379	0.820	0.678
WRKY40 M02548_2.00	Arabidopsis thaliana	NRGTCAWN	NWTGACYN	PBM Weirauch et al.(2014) pTH8398	0.819	0.644
WRKY40 M07379_2.00	Arabidopsis thaliana	NNNAAAGTCAAVR	YBTTGACTTTNNN	Dap-seq OMalley et al.(2016) WRKY40_colamp_a	0.819	0.644
WRKY40 M07380_2.00	Arabidopsis thaliana	NNVAAAGTCAAVRNH	DNYBTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY40_col	0.819	0.644
WRKY40 M08180_2.00	Arabidopsis thaliana	NNAGTCAANN	NNTTGACTNN	ChIP-seq Mathelier et al.(2014) MA1085.2	0.819	0.644
WRKY18 M02560_2.00	Arabidopsis thaliana	NNRGTCAANN	NNTTGACYNN	PBM Weirauch et al.(2014) pTH7360	0.816	0.695
WRKY18 M00900_2.00	Arabidopsis thaliana	NVGTCNN	NNGACBN	PBM Franco-Zorrilla et al.(2014) WRKY18	0.816	0.695
WRKY18 M07416_2.00	Arabidopsis thaliana	NNHRGTCAASR	YSTTGACYDNN	Dap-seq OMalley et al.(2016) WRKY18_col_a	0.816	0.695
WRKY18 M07417_2.00	Arabidopsis thaliana	NNNHWAGTCAANR	YNTTGACTWDNNN	Dap-seq OMalley et al.(2016) WRKY18_colamp_a	0.816	0.695
WRKY18 M11465_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY18_Q2	0.816	0.695
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0015s07530.1	WRKY	209	267	NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILTTTYEGTHNHP

Links
Other WRKY family TFs
Other *Populus trichocarpa* TFs

763 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGABI2DRAFT_191870	Agaricus bisporus	AGABI2DRAFT_191870	N
CERSUDRAFT_80362	Ceriporiopsis subvermispora	CERSUDRAFT_80362	N
CC1G_14628	Coprinopsis cinerea	CC1G_14628	N
DICSQDRAFT_61110	Dichomitus squalens	DICSQDRAFT_61110	N
FOMPIDRAFT_1062771	Fomitopsis pinicola	FOMPIDRAFT_1062771	N
GALMADRAFT_133154	Galerina marginata	GALMADRAFT_133154	N
GLOTRDRAFT_136174	Gloeophyllum trabeum	GLOTRDRAFT_136174	N
M413DRAFT_441255	Hebeloma cylindrosporum	M413DRAFT_441255	N
estExt_fgenesh3_kg.C_40166	Heterobasidion annosum	estExt_fgenesh3_kg.C_40166	N
HETIRDRAFT_313274	Heterobasidion irregulare	HETIRDRAFT_313274	N
JAAARDRAFT_145306	Jaapia argillacea	JAAARDRAFT_145306	N
K443DRAFT_88561	Laccaria amethystina	K443DRAFT_88561	N
LACBIDRAFT_311793	Laccaria bicolor	LACBIDRAFT_311793	N
MVLG_01921	Microbotryum violaceum	MVLG_01921	N
Moror_7350	Moniliophthora roreri	Moror_7350	N
PAXRUDRAFT_831153	Paxillus rubicundulus	PAXRUDRAFT_831153	N
PHACADRAFT_249271	Phanerochaete carnosa	PHACADRAFT_249271	N
PHLGIDRAFT_221070	Phlebiopsis gigantea	PHLGIDRAFT_221070	N
PISMIDRAFT_670789	Pisolithus microcarpus	PISMIDRAFT_670789	N
M404DRAFT_19643	Pisolithus tinctorius	M404DRAFT_19643	N
PLEOSDRAFT_1092752	Pleurotus ostreatus	PLEOSDRAFT_1092752	N
POSPLDRAFT_96125	Postia placenta	POSPLDRAFT_96125	N
RHTO_03592	Rhodosporidium toruloides	RHTO_03592	N
SCLCIDRAFT_138221	Scleroderma citrinum	SCLCIDRAFT_138221	N
SERLA73DRAFT_177482	Serpula lacrymans	SERLA73DRAFT_177482	N
CY34DRAFT_797697	Suillus luteus	CY34DRAFT_797697	N
BN946_scf184858.g52	Trametes cinnabarina	BN946_scf184858.g52	N
A1Q1_03604	Trichosporon asahii	A1Q1_03604	N

POPTR_0015s07530 (Populus trichocarpa) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

763 Related TFs

POPTR_0015s07530 **(Populus trichocarpa)
WRKY**